Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0304 AGTGATGCTGAACTAGTGGACGAAATTGTTAAGACCGTTCTTAATTTACCAGTCTTGTCTGCTACCAAATTTCCAGTTGGATTACAATCGCACATGGAGGACCTGATTCGAACTATCAAATACAAATCTACGGAAGTTTGTAAGATAGCGATATGTGGACAGGGAGGATCTGGTAAAACCACCCTTGCTAAAGCCATCTACCATCAAATTCATGATACATTCACGGAGAAAAGTTTCATTGAAGATATTGGACAAGTTAGCAGAATAAGAGGGGATCTTCGTGTACTAGAACAACTCCTTTCAGATGTCCTAAAATCAAAGGTAGAGATAGATAGCTTTGAGATGGGAAGAACTATGATTCGGGAAAGACTTTCTGGGAAAAGGGTGCTCATTGTACTTGACGATGTGCCTGAGTTTAATAGAGAACTACTATGGGAATACCGTCATTGGTTCGGAGGAGGAAGTGTAATAATCATTACAACAATACCTGAAAACCTACCGAGGATATATGAAGTTGATTCTGTTTTTCAGGTAAAGTTAATGAACGCAAACGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAACAAGAATACCATGTACTTGCAGAAAGAGTAGTTTCTTATTGTGGAGGACTACCTCTAGCTCTTGAAGTCATTGGAAGTTATTTATATGAAAGGACGAAAGAAGAATGGAATTCAGTATTGTTACGATTAGACAATATTCCCCAGCACGATCTTCAAAGGAAATTGAAAATAAGTTTCGACCGTTTACGCAATCAAATGGAAAAAGATTTATTTCTTGATGTATGTTGTTCCTTTGTTGGTAAGAGCAGAAGCTATGTTACGAAGATCCTAAATGGCTGTGGAATAGACGCTGATAGTGGAATAAGAGTTCTCATAAAGCATAGTCTCATACAAATTAATAAGGACAACAAATTAATAATGCATCCATTGCTACGAGAAATGGGAAGAGAAATTATTCGTCAAATTTCAGGAAAGGAACCTGAGAAGAACAGTAAACTGTGGTTTGATAAAGACGCAAGATATTCACTGTCAGAGAATACGCTCTTTTCATCTAAGGGCACAAAAATCATTCAGAGATTGCCTACCGGAAGAGATTTCTTCGGAAGCTATCCTTTACATGTAAGCGACCCATCAAGACTGCTGAAATTAGGTAGAGATTACCATCTTAAGAAACTAAGATGGATCAGTTTGCGAGGGTTTTCTTCAGAATATCTACCTAACGACTTTTATCTGCATGATGCAATAGCCATTGATGTAAAACACAGTCTTCTTCGATTCCTTTGGAAAGAACCCCAGGTTTTGGCGTGGCTAAAAATCCTTAATCTTAGTCACTCCAAGTACTTGAGAGAAACCCCTCACTTTTCCGGACTACCAAGTCTTGAACAGCTCATTCTCAAAGATTGTCCAAGATTGCGCAAAGTACACCGATCTATTGGACGTCTCTGCAATCTTATACTGCTAAATTTGAAGGACTGTACAAGTCTAAGCAATCTCCCCAGAGAGATATATAAGCTGAAATGTTTAAAAACTCTGATTCTATCTGGTTGTTTAAAGATTGACCTAATGGAAAAAGATATAGTACGAATGAAATCCTTGATAACTCTAATGGCTGAAAATACAGTTATGAAACAATTGCCTTTTACAATTGTAAGCCCAAAAATCATTGGATATATATCCCTACGTGGAAGTGAGGGATTGTCACATAATCTTTTTCCTTCTATCATTCGGTCTCGGATGTCGCCAACAATGAATCCCCTATCTTATATTCATCCCTTCATGGATATGGAGGATAATAGTTGGGATGATATTGCACCATTTCTTAGAAGCCTCGCGAATCTCCGAACTGTTCTGGTGGAATGTGACGCCGAGTTTCATCTATCTGAACAAGTAAAAACTACAGTGGTCGAATATGGTGGAAATAATACAGAATCAGCAATTTCAAAGAATCACCTCAAGTCTTTTCTGACTGGTGTTGGAAGATACAAAGAATTCTTCAATACTGTATTTGCAAGCAGTGAGTCATGTGATGTTTCTCTCCCAGGTGACAATGATCCTTATTGGTTGGCCCATATGGGTGATGGACATTCTGTTTCTTTAACTGTGCCACAAGATCGTGTCGTGAAGGGAATGGCTTTCTGTGTTGATTATTTATCAACCTCCAAAATCATTGAACCTAAACTTACTACTGTCTTAATTGTTAATTACACGAATTGCACATGCCAAATACACAACCATGGCACGGTAATTTCCTCTAATGATGAAGATTGGCCGGGCATAATGTCAAATTTAGGATCAGGAGACAAGGTGGAGATTTTTGTGAGTTTTGGTAATGGATTGGTGGTCAAGAACACAACTGCCTATTTGATATGTGATGAATCAAATGACTTGGAAAAGGAGCCTGTACCAAAGAAAATATCTCTCCTTAAATTCATAAAGAAAACTCTAATGTGA 2493 0.3807 SDAELVDEIVKTVLNLPVLSATKFPVGLQSHMEDLIRTIKYKSTEVCKIAICGQGGSGKTTLAKAIYHQIHDTFTEKSFIEDIGQVSRIRGDLRVLEQLLSDVLKSKVEIDSFEMGRTMIRERLSGKRVLIVLDDVPEFNRELLWEYRHWFGGGSVIIITTIPENLPRIYEVDSVFQVKLMNANESLELLSWHAFREAKPKQEYHVLAERVVSYCGGLPLALEVIGSYLYERTKEEWNSVLLRLDNIPQHDLQRKLKISFDRLRNQMEKDLFLDVCCSFVGKSRSYVTKILNGCGIDADSGIRVLIKHSLIQINKDNKLIMHPLLREMGREIIRQISGKEPEKNSKLWFDKDARYSLSENTLFSSKGTKIIQRLPTGRDFFGSYPLHVSDPSRLLKLGRDYHLKKLRWISLRGFSSEYLPNDFYLHDAIAIDVKHSLLRFLWKEPQVLAWLKILNLSHSKYLRETPHFSGLPSLEQLILKDCPRLRKVHRSIGRLCNLILLNLKDCTSLSNLPREIYKLKCLKTLILSGCLKIDLMEKDIVRMKSLITLMAENTVMKQLPFTIVSPKIIGYISLRGSEGLSHNLFPSIIRSRMSPTMNPLSYIHPFMDMEDNSWDDIAPFLRSLANLRTVLVECDAEFHLSEQVKTTVVEYGGNNTESAISKNHLKSFLTGVGRYKEFFNTVFASSESCDVSLPGDNDPYWLAHMGDGHSVSLTVPQDRVVKGMAFCVDYLSTSKIIEPKLTTVLIVNYTNCTCQIHNHGTVISSNDEDWPGIMSNLGSGDKVEIFVSFGNGLVVKNTTAYLICDESNDLEKEPVPKKISLLKFIKKTLM* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0304 830 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 803 IPR044974 GO:0006952
Pvu10g0304 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 274 IPR027417 -
Pvu10g0304 830 Pfam NB-ARC domain 30 253 IPR002182 GO:0043531
Pvu10g0304 830 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 803 - -
Pvu10g0304 830 SUPERFAMILY L domain-like 396 624 - -
Pvu10g0304 830 Gene3D Ribonuclease Inhibitor 396 679 IPR032675 -
Pvu10g0304 830 SUPERFAMILY "Winged helix" DNA-binding domain 253 354 IPR036390 -
Pvu10g0304 830 SMART AAA_5 45 182 IPR003593 -
Pvu10g0304 830 Gene3D - 181 264 IPR042197 -
Pvu10g0304 830 Gene3D - 4 171 IPR027417 -
Pvu10g0304 830 PRINTS Disease resistance protein signature 48 63 - -
Pvu10g0304 830 PRINTS Disease resistance protein signature 123 137 - -
Pvu10g0304 830 PRINTS Disease resistance protein signature 215 229 - -
Pvu10g0304 830 PRINTS Disease resistance protein signature 517 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0304 Pvu-Chr10 4280101 4283144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0304 450 575 WRKY Transcription Factor Family AT5G45050 31.746 6.75e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0304 - - pvu:PHAVU_010G0291001 1663.66