Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0303 ATGGAATCGTCATCTTCATCATCAAATCTGCCACGGATGTACGATGTGCTTATCAACTTTAATGGAGAAGACATCCAAAGGAAATTTGTTTCTCATCTCGATTCTGTTCTCTCTGCTGTTGGCTTCACCACTTTCCTTAACCACCCTAATGCAGACAACCCTCTTCACATCCAACAACCTATTCTCAATCTCTCTCGTGTAGCAATTGTTGTTTTCACCAAATCCTATTCTCAATCTACTTGGTGTCTTCATCAGCTTCAACAAATCATCAAATGGCACCAAACTTATCGCCGACATGTTCTGCCCGTTTATTACGAAATCCAGCCATCTGATGTACGTCTTCAGATGGGTGATTTTGGAAAAGCCTTCAAAGCAACTGCAGAGCAAGCATTCTCAGGACAACAACTGGAGCATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGGACAACATTGTTAAGACCGTTCTTAGTTTACCAGTCTTGTCTGTTACTAAATTTCCAGTTGGATTACAATCGCACATGGAGGATCTGATTCGAACTATCAAATATAAATCCACGGAAGTTTGTAGGATAGCGATATGTGGACAAGGAGGATCTGGTAAGACCACCCTTGCTAAAGCCATTTACCATCAAATTCATGGTACATTCACGAACAAAAGTTTCATTGAAGATATTGGACAAGTTAGCGGAATAAGAGGGGATCTTCGTTTACTAGAACAACTCCTTTCAGATGTCCTAAATACAAAGGTAGAGATAGATAGCTTTGAGATGGGAAGAAGTATGATTCGGGAAAAACTTTCTGGGAAAAGGGTGCTCATTGTACTTGACGATGTGCCTAAGTTTGATGCGACATTACTATGGGAATGCCGTCATTGGTTCAGAAGAGGAAGTGTAATAATCATTACAACAAGACCAGAAAACCTACCAAGGATATATCAAGCTGATTCTGTTTTTCGGATGATTCCAATGAACAGAAACGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAACAAGATTATCATTTCCTTGCAGAAAGAGTAGTTGCTTATTGTGGAGGACTACCTCTTGCTCTTGAAGTCATTGGAAGTTATTTATATGAAAGGACTAAAGAAGAATGGAATAGAGTACTCTTAAAATTAAAGAAAATTCCTAAGCTTAAATTTGATCAGATATTGAAAATAAGCTTCGAGGGTTTATGCAATCAAATGGAAAAAGATTTATTCCTTGATGTATGTTGTTCCTTTGTTGGTAAGGGCAGAGCCTATGTTAGGAAGATCTTAAATGGCTGTGGAATAGACCCTGACAGTGGAATAAGAGTTCTGATAGAGCGTAGTCTCATACAAGTTAATAAGAACAACAAATTAGGAATGCATCCGTTGCTACGAGAAATGGGAAGAGACATTATTCGTCAAATTTCAAGAAAGGAAACTGGGAAGAACAGTCAACTGTGGTTTGATACGGATGCAGAATATGCACTGTCAGAGAATGCGCTCTTTTCATCTAATGGCACAAAAGTCATTCAGAGATTGCCTACCGGAATAGATTTCTTCGGACGCTATCCTTTAGAGGTAATAGACCCATCAAGACTGCTGAAACGAGATTCTGAGTACCATTTTAAGAAACTGAGATGGATCAGTTTGCGAGGGTTTTCTTCAGAATACCTGCCTAACGACTTTTATCTGCATGATGCAATAGCCATTGATGTAAAACACAGTCTTCTTCGATTCGTTTGGAAAGAACCCCAGGTTTTGACGTGGCTAAAAGTTCTTAATCTTAGTCACTCCAATTACTTGATAGAAACCCCTGACTTTTCCGGACTACCAAGTCTTGAACAACTCATTCTCAAAGATTGTCCGAGATTGCGCGAGCCTTGCGAATCTTCGAAGTGTTCTGGTGGAATGTGA 1983 0.4004 MESSSSSSNLPRMYDVLINFNGEDIQRKFVSHLDSVLSAVGFTTFLNHPNADNPLHIQQPILNLSRVAIVVFTKSYSQSTWCLHQLQQIIKWHQTYRRHVLPVYYEIQPSDVRLQMGDFGKAFKATAEQAFSGQQLEHGMSRWSHALTKAANFFGWDESNYRSDAELVDNIVKTVLSLPVLSVTKFPVGLQSHMEDLIRTIKYKSTEVCRIAICGQGGSGKTTLAKAIYHQIHGTFTNKSFIEDIGQVSGIRGDLRLLEQLLSDVLNTKVEIDSFEMGRSMIREKLSGKRVLIVLDDVPKFDATLLWECRHWFRRGSVIIITTRPENLPRIYQADSVFRMIPMNRNESLELLSWHAFREAKPKQDYHFLAERVVAYCGGLPLALEVIGSYLYERTKEEWNRVLLKLKKIPKLKFDQILKISFEGLCNQMEKDLFLDVCCSFVGKGRAYVRKILNGCGIDPDSGIRVLIERSLIQVNKNNKLGMHPLLREMGRDIIRQISRKETGKNSQLWFDTDAEYALSENALFSSNGTKVIQRLPTGIDFFGRYPLEVIDPSRLLKRDSEYHFKKLRWISLRGFSSEYLPNDFYLHDAIAIDVKHSLLRFVWKEPQVLTWLKVLNLSHSNYLIETPDFSGLPSLEQLILKDCPRLREPCESSKCSGGM* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0303 660 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 649 - -
Pvu10g0303 660 SUPERFAMILY L domain-like 558 648 - -
Pvu10g0303 660 Gene3D - 343 426 IPR042197 -
Pvu10g0303 660 SUPERFAMILY "Winged helix" DNA-binding domain 415 515 IPR036390 -
Pvu10g0303 660 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 156 IPR035897 -
Pvu10g0303 660 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Pvu10g0303 660 Pfam NB-ARC domain 192 408 IPR002182 GO:0043531
Pvu10g0303 660 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 649 IPR044974 GO:0006952
Pvu10g0303 660 Pfam TIR domain 14 175 IPR000157 GO:0007165
Pvu10g0303 660 Gene3D - 178 336 IPR027417 -
Pvu10g0303 660 Gene3D Ribonuclease Inhibitor 544 657 IPR032675 -
Pvu10g0303 660 Gene3D - 11 177 IPR035897 -
Pvu10g0303 660 SMART till_3 13 153 IPR000157 GO:0007165
Pvu10g0303 660 PRINTS Disease resistance protein signature 210 225 - -
Pvu10g0303 660 PRINTS Disease resistance protein signature 285 299 - -
Pvu10g0303 660 PRINTS Disease resistance protein signature 377 391 - -
Pvu10g0303 660 PRINTS Disease resistance protein signature 608 624 - -
Pvu10g0303 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 436 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0303 Pvu-Chr10 4249527 4253271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0303 188 648 WRKY Transcription Factor Family AT5G45050 29.234 9.49e-52 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0303 - - pvu:PHAVU_010G029000g 1330.85