Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0298 ATGCAGATCTCTTCTTCGTCTTCATCATCTTCATCCTTCTTAAAATCAGAACCCCAGTTCAGATACGATGTGTTCATCAACTTTTGGGGAGCAGACATCGGTAGAAAGTTGGTTTCTCATCTCCATTCTGTCCTTTTACAAGCTCAAGTCAAAACTTTGATTAAGGAGGAGAATCTGCAGGAGGGAATGGAGCTGGAAGAACACATGCGAGCAATAGCAGCCACTAAGATTGCAATAATCGTTTTCTCCAAATCATACACTGAATCTACCTGCTGTCTTTTTCAGCTTGAAAAAATCATTGAATGCTTCGAAACATTTGGTCAAATAATTCTTCCCATATTTTACGAGGTTGACCCATTGAATTTAAGTTATCAGGTTGATTTCGGTTTCGGAAATGCGTGTGAAGAATTAATTGACCACAAAAGCTATCCATTAATGTTCAGGTGGAGACGTGCACTCAACACAGCGGCAGGTATCAGTGGTTTGGATGTCAGAGATTTCAGGCATGATGCTGAACTTGTGGAGAAAGTTGTTTTCCGCGTTTTTGAATTGCTGGACTATAAAGACTTCTCTATTACCCAATTTCCTGTTGGATTAGAGTGGCACGTGGAAAAGGTGATTGGATGTATTGAAAATCATTCCACCAAAGTGTGTATGATAGGGATATGGGGAATGGGAGGGTCAGGTAAAACTACCTTAGCCAAAGCCATCTATAATCGAATTTATCCTCCATTCATTGGTAAGAGTTTTATGGAAAATATTAGAGAAGTTTGGGATCCAGCAGGGCATGTTGATTTGCAGACCATGCAACTCAAGGTCGAGGTGGGAAGCGTTGGGATGGGAAAAACTATGCTCGAGAATGGACTTTCTAGAAAAAGGGTGCTGATTGTGCTTGATGATGTGAATAAGTTTGACCAATTAGAAAAACTAAGCTGGAATCGTGATTGGTTCGGTCAAGGAACTGTGATAATCATTACAACTAGAGATGTTCATCTACTGAACCGACTCAAAGTTGATTATGTTTATAAAATGGATGTTATGAATGAAAATGAGTCCCTTGAGCTTTTTAGTTGGCATGCCTTTAGAAAAGCAAAACCAAGAGAAGATTTTAATGAACTTGCAAGAAACATGGTTGCTTATTGTAGAGGACTACCACTAGCTCTTGAGGTTCTTGGTTCCTTTTTATGTGATAAGACAATGGAAGAGTGGGAAAGTGTATTGCCAAAAGCAAAAGTAATTCCCATTCATCAAATTCAAGAGAAATTGAGAAAAAGTTATGACGGTTTAAGCAATATGGAAAAGGACATATTTCTTGATGTATGTTGTTTCTTTGTTGGTAAAGACCGAGGTTATGTCACAGATATATTAAATGGATGTGAACTACATGCTGATATTGGAATAACAGTTCTCATAGAACGTGGTCTTATAAAAGTTGAAAGGAACAACAAACTTGAAATGCATCCTTTGTTTCGAGACATGGGAAGAGAAATTATTCGTCAGAGTTGGCCAAACGAACCAGGGAAAAGGAGTCGATTGTGGTTTCAGGATGATGTACAACATGTACTGAAAAAGATGACTGGGACAGAAGCTACCCAGGGATTGTCCCTGAAACTGCATTCGACAAGCACAGATTGTTTCAAAGCTCGTGCTTTCAAGAAAATGAAGAGATTAAGACTGCTACAACTGGATCATGTAAAACTTACTGGAGATTATGGGTACCTTTCTAAACAATTGAGATGGATTTGTTGGCAAGGGTTTCCTTCCAAGTACATACCAAATAACTTTCATATGGAAAATGTAATTGCAATTGATTTAAAACATAGTCATCTTCAACTCGTCTGGAAACAACCCCAGGTTTTAAAGTGGCTAAAATTCCTTAATCTTAGTCACTCCAAGTTTTTGAGAGAAACACCTGACTTTTCAGGACTACCAAGTCTTGAAAAGCTCATTCTAAAAGATTGCCCAAGTTTGTGCACGGTACACCAATCCATTGGAGATCTCCACAATCTACTTCTGTTAAATTTGAAAGACTGCACAAGTCTAAGCAATCTCCCCATAGAGATATATAAGTTGAAATCTTTAAGAACTTTCATCCTCTCTGGTTGTTTCAAGGTTAATATATTGGAAGAAGATATAGCGCAGATGAAATCCTTGATAACTCTTGTTGCTGAAAATACAGCTGTGAAAACAAGTGTCTTGTAA 2202 0.3815 MQISSSSSSSSSFLKSEPQFRYDVFINFWGADIGRKLVSHLHSVLLQAQVKTLIKEENLQEGMELEEHMRAIAATKIAIIVFSKSYTESTCCLFQLEKIIECFETFGQIILPIFYEVDPLNLSYQVDFGFGNACEELIDHKSYPLMFRWRRALNTAAGISGLDVRDFRHDAELVEKVVFRVFELLDYKDFSITQFPVGLEWHVEKVIGCIENHSTKVCMIGIWGMGGSGKTTLAKAIYNRIYPPFIGKSFMENIREVWDPAGHVDLQTMQLKVEVGSVGMGKTMLENGLSRKRVLIVLDDVNKFDQLEKLSWNRDWFGQGTVIIITTRDVHLLNRLKVDYVYKMDVMNENESLELFSWHAFRKAKPREDFNELARNMVAYCRGLPLALEVLGSFLCDKTMEEWESVLPKAKVIPIHQIQEKLRKSYDGLSNMEKDIFLDVCCFFVGKDRGYVTDILNGCELHADIGITVLIERGLIKVERNNKLEMHPLFRDMGREIIRQSWPNEPGKRSRLWFQDDVQHVLKKMTGTEATQGLSLKLHSTSTDCFKARAFKKMKRLRLLQLDHVKLTGDYGYLSKQLRWICWQGFPSKYIPNNFHMENVIAIDLKHSHLQLVWKQPQVLKWLKFLNLSHSKFLRETPDFSGLPSLEKLILKDCPSLCTVHQSIGDLHNLLLLNLKDCTSLSNLPIEIYKLKSLRTFILSGCFKVNILEEDIAQMKSLITLVAENTAVKTSVL* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0298 733 Pfam NB-ARC domain 201 427 IPR002182 GO:0043531
Pvu10g0298 733 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 25 730 - -
Pvu10g0298 733 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 161 IPR035897 -
Pvu10g0298 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 439 IPR027417 -
Pvu10g0298 733 SMART till_3 21 159 IPR000157 GO:0007165
Pvu10g0298 733 SUPERFAMILY "Winged helix" DNA-binding domain 417 523 IPR036390 -
Pvu10g0298 733 PRINTS Disease resistance protein signature 219 234 - -
Pvu10g0298 733 PRINTS Disease resistance protein signature 288 302 - -
Pvu10g0298 733 PRINTS Disease resistance protein signature 381 395 - -
Pvu10g0298 733 PRINTS Disease resistance protein signature 665 681 - -
Pvu10g0298 733 Gene3D - 20 191 IPR035897 -
Pvu10g0298 733 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 730 IPR044974 GO:0006952
Pvu10g0298 733 Pfam TIR domain 22 182 IPR000157 GO:0007165
Pvu10g0298 733 Gene3D - 346 430 IPR042197 -
Pvu10g0298 733 SUPERFAMILY L domain-like 498 726 - -
Pvu10g0298 733 Gene3D - 192 341 IPR027417 -
Pvu10g0298 733 Gene3D Ribonuclease Inhibitor 504 731 IPR032675 -
Pvu10g0298 733 ProSiteProfiles TIR domain profile. 20 185 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0298 Pvu-Chr10 4155918 4158626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0298 22 733 WRKY Transcription Factor Family AT4G12020 29.144 8.72e-76 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0298 - - pvu:PHAVU_010G027900g 1094.72