Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0297 ATGGAGTTCTCTTCTTCGTCGTCATCATCTTCATCCTTCTTAAAATCAGAACCCCAGTTCATATACGATGTGTTCATTAACTCTTGGGGAAAAGAAATCGGTAGAAAGTTGGTTTCTCATCTCCATTCTGTCCTTTTACAAGCTCAAGTCAAAACTTTGATTAAGGAGGAGAATCTGCAGGAGGGAATGGACCTGGATGAACACACGCGAGAAATAGCAGCCTCTAAGATTGCAATAATCGTTTTCTCTAAATCATACACTGAATCTACCTACTGTCTTCTTCAGCTTGAAAAAATCATTGAATGCTACGAAACTTTTGGGCAAATAGTTCTGCCCATATTTTACGAGATTGGCCCATTGGACGTACGCGATCAGAAGGATGATTTGGGAAAAGCGTTGAAAGAAGCTGCACACAAAAGCTATTCAGGAGAGCAACTGGAGCATGCATTATCCAGGTGGAGCCGTGCACTCACCACAGCTGCAGGTATCAGTGGTTGGGATGTCAGAAATTTCAGGCATGATGCTGAACTTGTGGAGCGAATTGTTAGCCGCGTTCGTGAATTGCTGGACTATAAAGACTTGTCCATTACCCAATTTCCTGTTGGATTAGAGTCGCACGTGGAAAAGGTGATTGGATATATTGAAAATCATTCCTCCAAAGTGTGTATGATAGGGATATGGGGAATGGGAGGATCAGGAAAAACTACCATAGCTAAAGCCATCTATAATCGAATTTATCGTCCATTCATTGGTAAGAGTCTTACTCAAAGTATTAGAGAATTTTGGGATCCTAAAACAAGGCCTATTGATTTGCAAGAAAGTCTTCTCTGTGATGTCCTAAAACCCAAGCCCGACATGAAATTCTTTGGGATTGGAAGAACTAGGATCAAGGATAAACTTTCTCGAAAAAAGTTGCTGATTGTGCTTGATGATATGAATGAGTTTGACTACTTAGAAAACGTATGCGGGAATCGTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACAACTAGAGATGTTAATGTACTGAACCTACTCAAAGTTGATTATGTTTATAAAATGGATCATATGAACGAAAATGAGTCCCTTGAGCTTTTTAGTTGGCATGCCTTTGGAGAAGCAAAACCAAGAAAAGACTTTAATGAACTTGCAAGACACACAGTTGCTTATTGTGGAGGACTACCACAAGCTCTTACTATCCTTGGTTCCTTTTTATGTGATAAGACAATGAAAGAGTGGGAAAGTGCATCGTCAAAACTAAAAAGAATTCCCATGGATCAAGTTCAAAACATATTGAAAATAATATTTGACGGTTTACGCAATCACATGGAAAAGGATGTATTTCTTGATATATGTTTTTCCTTTTCGTCAGAGAGAGGCTATGTCACAGATACTAAATGA 1404 0.3917 MEFSSSSSSSSSFLKSEPQFIYDVFINSWGKEIGRKLVSHLHSVLLQAQVKTLIKEENLQEGMDLDEHTREIAASKIAIIVFSKSYTESTYCLLQLEKIIECYETFGQIVLPIFYEIGPLDVRDQKDDLGKALKEAAHKSYSGEQLEHALSRWSRALTTAAGISGWDVRNFRHDAELVERIVSRVRELLDYKDLSITQFPVGLESHVEKVIGYIENHSSKVCMIGIWGMGGSGKTTIAKAIYNRIYRPFIGKSLTQSIREFWDPKTRPIDLQESLLCDVLKPKPDMKFFGIGRTRIKDKLSRKKLLIVLDDMNEFDYLENVCGNREWFGQGTVIIITTRDVNVLNLLKVDYVYKMDHMNENESLELFSWHAFGEAKPRKDFNELARHTVAYCGGLPQALTILGSFLCDKTMKEWESASSKLKRIPMDQVQNILKIIFDGLRNHMEKDVFLDICFSFSSERGYVTDTK* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0297 467 Gene3D - 15 188 IPR035897 -
Pvu10g0297 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 452 IPR027417 -
Pvu10g0297 467 Pfam NB-ARC domain 204 431 IPR002182 GO:0043531
Pvu10g0297 467 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 26 465 - -
Pvu10g0297 467 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 465 IPR044974 GO:0006952
Pvu10g0297 467 Gene3D - 357 441 IPR042197 -
Pvu10g0297 467 PRINTS Disease resistance protein signature 223 238 - -
Pvu10g0297 467 PRINTS Disease resistance protein signature 299 313 - -
Pvu10g0297 467 PRINTS Disease resistance protein signature 392 406 - -
Pvu10g0297 467 ProSiteProfiles TIR domain profile. 20 189 IPR000157 GO:0007165
Pvu10g0297 467 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 166 IPR035897 -
Pvu10g0297 467 Pfam TIR domain 22 185 IPR000157 GO:0007165
Pvu10g0297 467 Gene3D - 189 352 IPR027417 -
Pvu10g0297 467 SMART till_3 21 163 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0297 Pvu-Chr10 4150952 4152458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0297 22 454 WRKY Transcription Factor Family AT4G12020 26.196 3.96e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0297 - - pvu:PHAVU_010G028400g 930.243