Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0293 ATGGAATTCGCTTCTTCTTCATCATCATCATCGTCTTTATCCTTCTTAAAATCAGAACCCCAGTTCAGATACGATGTGTTCATCAACTTTTGGGGAGAAGACATCGGTAGAAAGTTGGTTTCTCATCTCCATTCTGTCCTTTTACAAGCTAAAGTCAACACTTTGATCAAGGAGGAAAATCTGCAGGGAATGGAGCTGGAAGAACACATGCGAGCAATAGCAGCCTCTAAGATTGCAATAATCGTTTTCTCCAAATCATACACTGAATCTACCTGCTGTCTTCTTCAGCTTCAAAAAATCATTGAATGCCAAGAAACTTTTGGCCAAATAGTTCTGCCCATATTTTACGAGATTGACCCATTGGATTTACGTGATCAGAAGGATGATTGTGGAAAAGCGTTGGAAGAAGCTGCACACAAAATCTATTCAGGAGAACAACTGGAACATGCATTGTTAATGTGGAGCCGTGCACTCACCAAAGCTGCAGGTATCAGTGGTTGGGATGTCAGAGATCTAAGGCATGATGCTGAACTTGTGGAGCAAATTGTTGGCCGCGTTCAGACATTGTTGGGCTATGCAGACTTGCCTATTACCGAATTTCCTGTTGGATTAGACTCCCAGGTGGAAAAGCTGATTAGATGTATTGAAAATCATTCCACGAGAGTGTGTATGATAGGGATATGGGGAATGGGAGGATCAGGTAAAACTACCATAGCCAAAGCCATCTATAATCGAATTTATCGTCTATTCATCGGTAAGAGTTTTTTTGAAAATATTAGACAAGTTTGGAATCGAGTATTTAGAAGGCGTGTTCCTTTGCAAGAAAAACTTCTTTATGATGTCCTAAAATCCAAGGTTGAGGTGGAAAGCGTTGGGATGGGAAGAACTATGATCCAGAACGTACTTTCTCGAAAAAAGTTGCTGATTGTGCTTGATGATGTGAATGAGTTTGACCAATTAGAAAACATATGCGGGAATCGTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACAACTAGAAATGTTGACGTACTGAACAGACTCAAAGTTGATTATGTTTATAAAATGGATGATATGAACGAAAACGAGTCCCTTGAGCTTTTTAGTTGGCATGCCTTTAGAGAAGCAAAACCAAGAAAAGACTTCAATGAACTTGCAAGAAACATAGTAGCTTACTGTGGAGGACTACCACTAGCTCTTAATGTCCTTGGTTACTTTTTATATAAAAAGAGAGTGGAAGAGTGTGAAAGTGTACTGGAAACACTAAAAAGAATTCCCATGGATGAAGTTCAGGAAATATTGAGAATAAGTTTTGACGGTTTATGGAATGACACGGAAAAGGATATATTTCTTGATTTATGTTGTTTCTTTATTGGTAAAGAGAGAGGTTATGTGACAGAGATACTAAATGGATGTAGACTACATGCTGATATTGGAATAAGTGTTCTCATTGAACGTGGTCTTATAAAAGTTAAAAAGAACAACAAACTTGCAATGCATCCCTTGTTACGAGACATGGGAAGAGAAATTATTCGTCAAAGTTCGCCAGAAGAACCGGGTAAAAGGAGTCGATTATGGTTTCAGGATAACGTAATAGATGTACTGAAAGAGAATAGTGGGACAGAAGCTACCCAGGGATTGTCCCTGAAACTGCATTCAACCAACAGAGGTAGCTTCAAAGCTCATGCTTTCAAGGAAATGAAGAGATTAAGACTGCTACAACTGGATCATGTACATCTTACTGGAGATTATGGATACTTTTCCAAAGAATTGATATGGATTTGTTGGCAAGGGTTTCGTTCTAAGTACATACCAAAAAACTTTCCTATGGAAAACGTAATTGCAATTGATTTAAAACATAGTCATCTTCAGCTCATCTGGAAAACACCCCAGGATTTAAAGTGGCTAAAATTTCTTAATCTTAGTCACTCCAAGTTCTTGATAGAAACACCTGACTTTTCAGGACTACCAAGTCTTGAAAAGCTAATTCTAAAGGATTGCCCAAGTTTGTGCGAGGTACACGAATCCATTGGAGATCTCCGCAATCTACTACTGATAAATTTGAAAGACTGCACAAGTCTAAGCAATCTCCCCAAAGAGGTATATAAGTTGAAATCTTTAAGAACTTTCATTCTCTCTGGTTGTTTGAAGATTGACATATTGGAAGAAGATATAGCGCAGATCAAATCCTTGATAACTCTAGTAGCTGAAAGTACAGCTGTGAAACAAGTGCCCTTTTCAATTGTAATCTCAAAAAGCATTGGATATATATCCCTACGTGGATTTGAAGGATTGTCAACTAGTATTTTTCCTTCTATCATTCGGTCTTGGATGTCACCAACACTGAATCCCCAATCTTTTGTTAGTCCGTTTTGCATGGATATGGAGAATAATAATTGGCGTGACCTTGCGCCATTGCATAGCAGCCTTGCAAATCTTCGCAGTATTTTGGTTCAAGGTGACACGGAGTTTCAACTATCTAATGAAGTGAAAACCATTCTTGTTGAATACGGTGTAAATTTTACAGAATCAAGAATTTCAAAGCATCACTTGAGGTTTTCTTTGATTGGTGTTGGAAGTTACAATGAATTCCTGAATACTCTTAGCAATAGCGTTTCTGAGGGATTGTCAAGCAGTGAGTCTTGTGATGTTTCTCTTCCAGGTGACAACTATCCTTATTGGTTGGCGAATGTGGGTGAGGGACATTCAGTTTGTTTCAATGTGCCTCAGGATTGTGACATGAAGGGAATGGCTTTGTGTGTTGTATATTTATCAACCCCTGAAATCGTGGCAACTGAATGTCTTACAAGTGTCTTAGTGGTTAATTACACAAAGTGCACATTACATATGCACAGGCATGGCAGAGTAATTTCCTTCAATGATGAAGATTGGCATGGCATAATGTCAAATTTAGGATCTGGAGACAAGGTGGAGATTTTCGTGACTTTTGGTCATGGATTGGTGGTGAAGAACACAGCTCTCTATTTGATATGTGGTGAATCAAATGACTTGGAAAAAGAACCTGGTGCTGTTATGGAATGA 3045 0.3862 MEFASSSSSSSSLSFLKSEPQFRYDVFINFWGEDIGRKLVSHLHSVLLQAKVNTLIKEENLQGMELEEHMRAIAASKIAIIVFSKSYTESTCCLLQLQKIIECQETFGQIVLPIFYEIDPLDLRDQKDDCGKALEEAAHKIYSGEQLEHALLMWSRALTKAAGISGWDVRDLRHDAELVEQIVGRVQTLLGYADLPITEFPVGLDSQVEKLIRCIENHSTRVCMIGIWGMGGSGKTTIAKAIYNRIYRLFIGKSFFENIRQVWNRVFRRRVPLQEKLLYDVLKSKVEVESVGMGRTMIQNVLSRKKLLIVLDDVNEFDQLENICGNREWFGQGTVIIITTRNVDVLNRLKVDYVYKMDDMNENESLELFSWHAFREAKPRKDFNELARNIVAYCGGLPLALNVLGYFLYKKRVEECESVLETLKRIPMDEVQEILRISFDGLWNDTEKDIFLDLCCFFIGKERGYVTEILNGCRLHADIGISVLIERGLIKVKKNNKLAMHPLLRDMGREIIRQSSPEEPGKRSRLWFQDNVIDVLKENSGTEATQGLSLKLHSTNRGSFKAHAFKEMKRLRLLQLDHVHLTGDYGYFSKELIWICWQGFRSKYIPKNFPMENVIAIDLKHSHLQLIWKTPQDLKWLKFLNLSHSKFLIETPDFSGLPSLEKLILKDCPSLCEVHESIGDLRNLLLINLKDCTSLSNLPKEVYKLKSLRTFILSGCLKIDILEEDIAQIKSLITLVAESTAVKQVPFSIVISKSIGYISLRGFEGLSTSIFPSIIRSWMSPTLNPQSFVSPFCMDMENNNWRDLAPLHSSLANLRSILVQGDTEFQLSNEVKTILVEYGVNFTESRISKHHLRFSLIGVGSYNEFLNTLSNSVSEGLSSSESCDVSLPGDNYPYWLANVGEGHSVCFNVPQDCDMKGMALCVVYLSTPEIVATECLTSVLVVNYTKCTLHMHRHGRVISFNDEDWHGIMSNLGSGDKVEIFVTFGHGLVVKNTALYLICGESNDLEKEPGAVME* 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0293 1014 Gene3D Ribonuclease Inhibitor 526 837 IPR032675 -
Pvu10g0293 1014 Pfam TIR domain 24 186 IPR000157 GO:0007165
Pvu10g0293 1014 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 167 IPR035897 -
Pvu10g0293 1014 PRINTS Disease resistance protein signature 224 239 - -
Pvu10g0293 1014 PRINTS Disease resistance protein signature 301 315 - -
Pvu10g0293 1014 PRINTS Disease resistance protein signature 394 408 - -
Pvu10g0293 1014 PRINTS Disease resistance protein signature 679 695 - -
Pvu10g0293 1014 Gene3D - 359 443 IPR042197 -
Pvu10g0293 1014 SMART till_3 23 164 IPR000157 GO:0007165
Pvu10g0293 1014 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 997 IPR044974 GO:0006952
Pvu10g0293 1014 Gene3D - 189 354 IPR027417 -
Pvu10g0293 1014 Pfam NB-ARC domain 206 431 IPR002182 GO:0043531
Pvu10g0293 1014 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 27 997 - -
Pvu10g0293 1014 Gene3D - 17 188 IPR035897 -
Pvu10g0293 1014 ProSiteProfiles TIR domain profile. 22 190 IPR000157 GO:0007165
Pvu10g0293 1014 SUPERFAMILY L domain-like 512 818 - -
Pvu10g0293 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 454 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0293 Pvu-Chr10 4090392 4094611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0293 24 771 WRKY Transcription Factor Family AT4G12020 28.534 3.60e-71 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0293 - - pvu:PHAVU_010G027900g 1613.2