LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g0291	ATGTACGATGTGCTCATCAACTTTACTGGAGAAGACATCCAAAAGAAATTTGTTTCTCATCTCGATTCTGTCCTCTCTGATGTTGGCTTCACCACTTTCCTTCACCACCCCAATGCACTCAACCCAATGCACATCCAACAACCTATTCTCAATCTCTCTCGTGTAGCAATTGTTGTTTTCACCAAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAACTTCAACAAATCATTGAATGGCACGAAACTTATTGCCGACATGTTCTGCCCGTTTATTACGAAATTGAGCCATCTGATGTACGTCTTCAGATGGGTGATTTTGGTAAAGCTTTCAAAGAAACGGCACACCAAACATTTTCAGGACAACAACTGGAGCATGGCACGTCCAGATGGAGCCAGGCACTCACCAAAGCTGCAAATTTATTTGGATGGGATGAAAGCAACCACAGGAGTGATGCTGAACTAGTCGACAAAATTGTTAAAAGCCTTCTTAATTTACCAGTGTTGTCTGCTACTAAATTTCCAGTTGGATTACAATACCAAGTGGAGGATCTGATTGGAACTATCAAAAGTAAATCCACGGAAGATTTTAGGATAGCGATATGTGGACAGGGAGGATGTGGTAAAACCACCCTTGCAAAAGCCATCTATAATCAAATTCATGGTACATTCACGGAGAAAAGTTTTATTGAAGATATTGGACAATTTAGTGGAATAAGAGGGGATCTTCGTTTACAAGAACAACTTCTTTCAGATGTCCTAAAAACAAAGGTGAAGATAAGCAGCGTTGAGATGGGAAAAAGAATGATTCGGGAAAGACTTTCTGGGAAAAGGGTGTTCATTGTACTTGACGATGTGCCTGAGTTTTGTGCATTACTCGACCTATGGGAATACCACCATTGGTTCAGAGGAGGAACTATAATAATCATTACAACGAGAGATGAACACATACTGAGGAGACATCAAGTTGATTATATTTTTCGGATAAATCCAATGAGCCCAAACGAGTCCCTTGAGCTTCTTAGTTGGCATGCATTTAGAGAACCAAAACCAAAAGAAGAATACCATTTTCTTGCAAAAAGAGTAGTTGCTTATTGTGGAGGACTACCTCTTGCTCTTGAAGTCATTGGAAGTTATTTATATGAAAGGAAGAAAGAAGAATGGGATAGAGTATTGTTAAGATTAGACAATATTCCCCAGCATGAAATGTCACATATATTGAAAATAAGCTTTGACGGTTTACATAGTCAAATGGAAAAAGATTTATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAAAGCAGAGCCTATGTTACGAAGATCCTAAATGGCTGTGGAGTAGACCATGATAGTGGAATAAGAGTTCTCATAAAGCGTAAGCTCATAAAAGTTAAAGAAAACAACAAATTTGGAATGCATCATTTGCTACGAGAAATGGGAAGAGAAATTATTCGTCAAATTTCAGGAAAGGGACCTGAGGAACCTGGGAAGAGAAGTCGACTATTGCCTTTGAAAATGCTTTTAACAACAAAAGATTTCTTCGACCGTTATCCTTTAGTGGTAGAAGACACATTAAGACTTCTGAGATTCGCAGGAAACTCTGAGTACCATTATACGAAACTGAGATGGATCAGTTTGCAAGGGTTTTCTTCAGAATACCTTCCTAATGACTTTTTTCTGCATTATGCAATAGCAATTGATTTAAAATACAGTCTTCTTCGATTCGTCTGGAATGAACCCCAGGTTTTGGCGTGGCTAAAAGTCCTTAATCTTAGTCACTCCAAGTACTTGACAAAAACCCCTGACATTTCGAAACTACCAAGTCTTGAACAGATCATTCTCAAAGATTGCCCAAGATTGCGCGAAGTACACCCTTCTATTGGATGTCTCTGCAATCTTATACTGCTAAATTTGAAGGATTGTACAAGTCTAAGCAATCTGCACAGAAAGATATATAA	1958	0.3851	MYDVLINFTGEDIQKKFVSHLDSVLSDVGFTTFLHHPNALNPMHIQQPILNLSRVAIVVFTKTYSQSAWCLHQLQQIIEWHETYCRHVLPVYYEIEPSDVRLQMGDFGKAFKETAHQTFSGQQLEHGTSRWSQALTKAANLFGWDESNHRSDAELVDKIVKSLLNLPVLSATKFPVGLQYQVEDLIGTIKSKSTEDFRIAICGQGGCGKTTLAKAIYNQIHGTFTEKSFIEDIGQFSGIRGDLRLQEQLLSDVLKTKVKISSVEMGKRMIRERLSGKRVFIVLDDVPEFCALLDLWEYHHWFRGGTIIIITTRDEHILRRHQVDYIFRINPMSPNESLELLSWHAFREPKPKEEYHFLAKRVVAYCGGLPLALEVIGSYLYERKKEEWDRVLLRLDNIPQHEMSHILKISFDGLHSQMEKDLFLDVCCFFVGKSRAYVTKILNGCGVDHDSGIRVLIKRKLIKVKENNKFGMHHLLREMGREIIRQISGKGPEEPGKRSRLLPLKMLLTTKDFFDRYPLVVEDTLRLLRFAGNSEYHYTKLRWISLQGFSSEYLPNDFFLHYAIAIDLKYSLLRFVWNEPQVLAWLKVLNLSHSKYLTKTPDISKLPSLEQIILKDCPRLREVHPSIGCLCNLILLNLKDCTSLSNLHRKIY	652

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g0291	652	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	7	652	IPR044974	GO:0006952
	Pvu10g0291	652	Gene3D	Ribonuclease Inhibitor	525	652	IPR032675	-
	Pvu10g0291	652	SMART	till_3	1	141	IPR000157	GO:0007165
	Pvu10g0291	652	SMART	AAA_5	195	330	IPR003593	-
	Pvu10g0291	652	ProSiteProfiles	TIR domain profile.	1	167	IPR000157	GO:0007165
	Pvu10g0291	652	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	158	425	IPR027417	-
	Pvu10g0291	652	SUPERFAMILY	Toll/Interleukin receptor TIR domain	1	144	IPR035897	-
	Pvu10g0291	652	SUPERFAMILY	L domain-like	493	648	-	-
	Pvu10g0291	652	SUPERFAMILY	"Winged helix" DNA-binding domain	402	488	IPR036390	-
	Pvu10g0291	652	Gene3D	-	332	415	IPR042197	-
	Pvu10g0291	652	Pfam	NB-ARC domain	179	401	IPR002182	GO:0043531
	Pvu10g0291	652	PRINTS	Disease resistance protein signature	198	213	-	-
	Pvu10g0291	652	PRINTS	Disease resistance protein signature	273	287	-	-
	Pvu10g0291	652	PRINTS	Disease resistance protein signature	366	380	-	-
	Pvu10g0291	652	PRINTS	Disease resistance protein signature	581	597	-	-
	Pvu10g0291	652	Pfam	TIR domain	2	163	IPR000157	GO:0007165
	Pvu10g0291	652	Gene3D	-	162	326	IPR027417	-
	Pvu10g0291	652	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	7	652	-	-
	Pvu10g0291	652	Gene3D	-	1	161	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g0291	Pvu-Chr10	4076091	4078412	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g0291	2	647	WRKY Transcription Factor Family	AT4G12020	27.338	9.74e-57	206

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g0291	-		-	pvu:PHAVU_010G029000g	934.095