Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0287 ATGGAATCGTCATCTTCATTATCAAATCTGCCACGGATGTACGATGTGCTTATCAACTTTAATGGAGAAGACATCCAAAGGACATTTGTTTCTCATCTCGATTCTGACCTCTCTGCTGTTGGCCTCACCACCTTCCTTCACCACCCCAATGCAGTCAATCCAACGCACATCCAACAACCTATTCTCAATCTCTGTCGGGTAGCAATTGTAGTTTTTACCAAATCCTATTCTCAATCTGCTTGGTGTCTTAATCAGCTTCAACAAATCATCAAATGGCACCAAACTTATTGCCGACATGTTCTGCCCGTTTATTACGAAATTCACCCATCTCATGTACGTCTTCAAAAGGGTAATTTTGGAAAAGCCTTCAAAGCAACTGCACACCAAACATTCTCAGGACAACAACTGAGGCAGGGCATGTCTAGATGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGAAATCACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGATCGTTCTTCATTTACCAATCTTGTCTGCTACAAAATTTCCAGTTGTATTAGAATCCCGTGTGAAAGATGTGATTCAGAGCATAAAAAATAAATCCACCCAAGTTTTAACTATACTGATATGTGGAAGAGAAGGATCGGGTAGAACCACTCTTGCCAAAGCCATCTACAATCAAATTCATCATACATTCACGGAGAAAAGTTTCATTGAAGATATTGCAGAAGGTAGTCAAACAAGAGGGTATGTTCATTTACAAGAACAACTTCTTTCAGATGTACTAAAAACAAAGGTGGAGATAAGTGACGTTGAGATGGGAAGAAGTATGATTTGGGAAAGACTATATGGGAAAAGGGTGCTTCTTGTACTTGACGATTTGAATGACTATGGCGAATTAGATCTCTGGGGAAGTAGTTCATGGTTCGGTGAAGGAACTGTAATAATCATTACAGCGAGAGATGAAGTAGACCTGCCGAGTATGCTTGAAGTTGATTCTGTTTTTCAGATGATTCCAATGAACGCAAACGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAAAAAGAATACCGTGTACTTGCAAAAAGAGTAGTTGCTTATTGTGGAACACTACCTCTAGCTCTCGAAGTCATTGGAACTTATTTATACAAAAGGACGAAAGATGAATGGAATAGAGTATTGATAAGATTAGACAATATTCCCCAGCATGAAGTTCCACAGATATTGAAAATAAGTTTTGACGGTTTAGCTAATCAAATAGAAAAAGATTTATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAAAGCAGAGCCTATGTTACCAAGATCCTAAATGGCTGTGGAGTAGACTCTGATAGTGGAATAAGAGTTCTCATAAAGCGTAACCTCATCAAAGTTAAAGAAAACAACAAATTTGGAATGCATCATTTGCTACGAGAAATGGGAAGAGAAATTATTAGTGAAATTTCAAGAAAGGAATCTGGGAAGAACAGTCGACTGTGGCCTCATGAGGATCTAAAACATGAATTTTCAGTGAATACTCTCTTTTCATCACCGGGTAAAAAGGTCATTCAGAGATTGTCTAGCGGAAGAGATTTCTTCGAACGTTATCCTGTAGAGGTAAGAGACCCATCACCGGATACAAAAGTCTTCGAACTCGCTGGACTGCTGAAACTCGCTGGAGATTCCGACGACCATTCTAAGAATACCTACCTAACGGCTTTAATCTGCATGATGCAATAG 1773 0.3937 MESSSSLSNLPRMYDVLINFNGEDIQRTFVSHLDSDLSAVGLTTFLHHPNAVNPTHIQQPILNLCRVAIVVFTKSYSQSAWCLNQLQQIIKWHQTYCRHVLPVYYEIHPSHVRLQKGNFGKAFKATAHQTFSGQQLRQGMSRWSHALTKAANFFGWDERNHRSDAELVDKIVKIVLHLPILSATKFPVVLESRVKDVIQSIKNKSTQVLTILICGREGSGRTTLAKAIYNQIHHTFTEKSFIEDIAEGSQTRGYVHLQEQLLSDVLKTKVEISDVEMGRSMIWERLYGKRVLLVLDDLNDYGELDLWGSSSWFGEGTVIIITARDEVDLPSMLEVDSVFQMIPMNANESLELLSWHAFREPKPKKEYRVLAKRVVAYCGTLPLALEVIGTYLYKRTKDEWNRVLIRLDNIPQHEVPQILKISFDGLANQIEKDLFLDVCCFFVGKSRAYVTKILNGCGVDSDSGIRVLIKRNLIKVKENNKFGMHHLLREMGREIISEISRKESGKNSRLWPHEDLKHEFSVNTLFSSPGKKVIQRLSSGRDFFERYPVEVRDPSPDTKVFELAGLLKLAGDSDDHSKNTYLTALICMMQ* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0287 590 Gene3D - 344 427 IPR042197 -
Pvu10g0287 590 Gene3D - 175 334 IPR027417 -
Pvu10g0287 590 Pfam TIR domain 14 182 IPR000157 GO:0007165
Pvu10g0287 590 SMART till_3 13 153 IPR000157 GO:0007165
Pvu10g0287 590 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 517 IPR044974 GO:0006952
Pvu10g0287 590 Pfam NB-ARC domain 191 411 IPR002182 GO:0043531
Pvu10g0287 590 Gene3D - 11 174 IPR035897 -
Pvu10g0287 590 PRINTS Disease resistance protein signature 210 225 - -
Pvu10g0287 590 PRINTS Disease resistance protein signature 285 299 - -
Pvu10g0287 590 PRINTS Disease resistance protein signature 378 392 - -
Pvu10g0287 590 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 517 - -
Pvu10g0287 590 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 156 IPR035897 -
Pvu10g0287 590 SUPERFAMILY "Winged helix" DNA-binding domain 414 517 IPR036390 -
Pvu10g0287 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 437 IPR027417 -
Pvu10g0287 590 SMART AAA_5 207 345 IPR003593 -
Pvu10g0287 590 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0287 Pvu-Chr10 4037819 4041178 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0287 14 528 WRKY Transcription Factor Family AT4G12020 27.447 5.90e-52 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0287 - - pvu:PHAVU_010G027500g 1188.33