Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0283 ATGGAATTGGCGTCTTCATCAACCAAACTCTCAAAGATGTACGACGTGCTCATCAACTTCAATGGAGAAGACATCCAAAGGAAATTTGTGTCTCATCTCGATTCTGCCCTCTCTGCTGTTGGCTTCACCACTTTCCTTCACCACCCCAATGCACACAACCCAATTCACTTCCAACAACCTATTCTCAATCTCTCTCGTGTAGCAATTGTTGTTTTCACCACAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATCAAATGGCACCAAACTTATTGCCGACATGTTCTGCCTGTTTATTACGAAATCCAGTCATCTGATGTACGTCTTCAGATGGGTGATTTTGGAAAAGCCTTCAAAGCCACTGCACAACAAACATTCTCACCACAACAACTGGAGCATGGCATGTCCAGATGGAGCCACGCACTCACCAAAACTGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGACCGTTCTTCATTTACCAATCTTGTCTGCTACAAAATTTCCAGTTGGATTAGAATCCCGTGTGGAGGATGTGATTCGAACCATAAAAAGTAAATCCACCCAAGTTTTTACTATAGCGATATGTGGAATGGAAGGATCGGGTAGAACCACTCTTGCCAAAGCCATCTACAATCAAATTCATGGTACATTCACGGAGAAAAGTTTCATCGAAGATATTGCACAAGTTAGTCAAACAAGAGGGTATGTTCCTTTACAAGAACAATTTCTTTCAGATGTACTAAAAACAAAGGTGGAGATAAGTGACGTTCAGATGGGAAAAAGTATGATTTGGGAAAGACTATATGGGAAAAGGGTGCTTCTTGTACTTGACGATTTGAATGACTATGGCCAATTAGGCCTCTGGGGAACTAGTTCATGGTTCGGTGAAGGAACTGTAATAATCATTACAGCGAGAGATGAAGTAGACCTGCCGAGTATGCTTGAAGTTGATTCTGTTTTTCAGATGATTCCAATGAACGCAAACGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAAAAAGAATACCGTGTACTTGCAAAAAGAGTAGTTGCTTATTGTGGAACACTACCTCTAGCTCTCGAAGTCATTGGAACTTATTTATACAAAAGGACGAAAGATGAATGGAATAGAGTATTGATAAGATTAGACAATATTCCCCAGCATGAAGTTCCACAGATATTGAAAATAAGTTTTGACGGTTTAGCTAATCAAATAGAAAAAGATTTATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAAAGCAGAGCCTATGTTACCAAGATCCTAAATGGCTGTGGAGTAGACTCTGATAGTGGAATAAGAGTTCTCATAAAGCGTAACCTCATCAAAGTTAAAGAAAACAACAAATTTGGAATGCATCATTTGCTACGAGAAATGGGAAGAGAAATTATTAGTGAAATTTCAAGAAAGGAATCTGGGAAGAACAGTCGACTGTGGCCTCATGAGGATCTAAAACATGAATTTTCAGTGAATACTCTCTTTTCATCACCGGGTAAAAAAGTCATTCAGAGATTGTCTAGCGGAAGAGATTTCTTCGAAACTTATCCTGTAGAG 1650 0.3939 MELASSSTKLSKMYDVLINFNGEDIQRKFVSHLDSALSAVGFTTFLHHPNAHNPIHFQQPILNLSRVAIVVFTTTYSQSAWCLHQLQQIIKWHQTYCRHVLPVYYEIQSSDVRLQMGDFGKAFKATAQQTFSPQQLEHGMSRWSHALTKTANFFGWDESNYRSDAELVDKIVKTVLHLPILSATKFPVGLESRVEDVIRTIKSKSTQVFTIAICGMEGSGRTTLAKAIYNQIHGTFTEKSFIEDIAQVSQTRGYVPLQEQFLSDVLKTKVEISDVQMGKSMIWERLYGKRVLLVLDDLNDYGQLGLWGTSSWFGEGTVIIITARDEVDLPSMLEVDSVFQMIPMNANESLELLSWHAFREPKPKKEYRVLAKRVVAYCGTLPLALEVIGTYLYKRTKDEWNRVLIRLDNIPQHEVPQILKISFDGLANQIEKDLFLDVCCFFVGKSRAYVTKILNGCGVDSDSGIRVLIKRNLIKVKENNKFGMHHLLREMGREIISEISRKESGKNSRLWPHEDLKHEFSVNTLFSSPGKKVIQRLSSGRDFFETYPVE 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0283 550 SUPERFAMILY "Winged helix" DNA-binding domain 414 517 IPR036390 -
Pvu10g0283 550 Gene3D - 7 174 IPR035897 -
Pvu10g0283 550 Pfam NB-ARC domain 191 411 IPR002182 GO:0043531
Pvu10g0283 550 PRINTS Disease resistance protein signature 210 225 - -
Pvu10g0283 550 PRINTS Disease resistance protein signature 285 299 - -
Pvu10g0283 550 PRINTS Disease resistance protein signature 378 392 - -
Pvu10g0283 550 SMART till_3 13 153 IPR000157 GO:0007165
Pvu10g0283 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 437 IPR027417 -
Pvu10g0283 550 Pfam TIR domain 14 182 IPR000157 GO:0007165
Pvu10g0283 550 Gene3D - 175 334 IPR027417 -
Pvu10g0283 550 Gene3D - 344 427 IPR042197 -
Pvu10g0283 550 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 518 - -
Pvu10g0283 550 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 518 IPR044974 GO:0006952
Pvu10g0283 550 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Pvu10g0283 550 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0283 Pvu-Chr10 4002517 4004460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0283 11 528 WRKY Transcription Factor Family AT4G12020 27.863 1.71e-54 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0283 - - pvu:PHAVU_010G027500g 1002.28