Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0280 ATGAAATTGGCCTCTTCAACATCCAAAATCTCACCGATGTATGATGTGCTCATCAACTTCAATGGAGAAGACATCCAAAGGAAATTTGTCTCTCATCTAGATTCTGTCCTCTCTACTGTTGGCTTCACCACTTTCCTTCACCACCCTAATGCACTCAACCCAATTCACATCGAACAACCTATTCTCAATCTCTCTCGTGTAGCAATTGTTGTTTTCACCAAAACCTATTCTCAATCTGCTTGGTGTCTTCAACAGCTTCAACAAATCATTAGATGGCAAGAAACTTATTGTCGAAATGTTCTGCCAGTTTATTACGAAATTGAGCCATCTGATGTACGTCTTCAGAAGGGTGATTTTGGAAAAGCCTTCAAAGAAACTGCACACCAAACATTTTCAGGACAACAACTGGAACATGCCATGTCCAAATGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGACCGTTCTTAATTTACCACTATTGTCTGCCACTAAATTTCCAGTTGGCTTACAATCGCACATGGAGGATCTGATTCGAGCTATCAAAAATAAATCCACGGAAGTTTGTTGGATAGCTATATGTGGAGAGGAAGGATCTGGTAAAACCACCCTTGCTACAGCTATCTACCATCAAATTCACGGTACATTCACGGAGAAAAGTTTCATTGAAGATATTGGACAAGTTAGCAGAATAAGAGGGAATCTTGGTTTACTAGAACAAATCCTTTCAGATGTCCTAAAAGCAAAGGTAGAGATAGGTACCTTTGAGATGGGAAGGCGTATGATTCGGGAAAGACTTTCTGGGAAAAGGGTGCTCATTGTACTTGACGATATGCCTACGTTTCATGCGACATTACTATGGAAATGCAGTCATTGGTTCAGAGGAGGAAGTGTAATAATCATTACAACAGCATCTAAAAACCTACCGATGCTATATCGAACTGATTCTGTTTTTCAGGTAGAGCTAATAATGAACACAGATGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAAGATTATCTTTTCCTCGCAGAAAGAGTAGTTGCTTATTGTGGAGGACTACCTCTAGCTCTTGAAGTCATTGGAAGTTATTTATATCAAAGGACGAAAAAAGAATGGAATAGAGTACTCTTAAAACTAAAGAAAATTCCCGAGTTTATTAAATTTGATCAGATATTGAAAATAAGCTTTGACGGTTTATGCAATCAAATGGAAAAAGATTTATTCCTTGATCTATGTTGTTCCTTTGTTGGTAAAGGCAGAGCCTGTGTTACGAAGATCCTAAACGGCTGTGGAATAGACGCTGATAGTGGAATAAGAGTTTTGATTGAGCGTAGTCTCATACGAGTTAATAAGAACAACAAATTAGGAATGCATCCGTTGCTACGAGAAATGGGAAGAAATATTATTGGTGAAATTATTGATGAGGATATGAAGCATGCAACTCTCTTTTCATCACCGGGGACAAGATTCATTTAG 1560 0.3885 MKLASSTSKISPMYDVLINFNGEDIQRKFVSHLDSVLSTVGFTTFLHHPNALNPIHIEQPILNLSRVAIVVFTKTYSQSAWCLQQLQQIIRWQETYCRNVLPVYYEIEPSDVRLQKGDFGKAFKETAHQTFSGQQLEHAMSKWSHALTKAANFFGWDESNYRSDAELVDKIVKTVLNLPLLSATKFPVGLQSHMEDLIRAIKNKSTEVCWIAICGEEGSGKTTLATAIYHQIHGTFTEKSFIEDIGQVSRIRGNLGLLEQILSDVLKAKVEIGTFEMGRRMIRERLSGKRVLIVLDDMPTFHATLLWKCSHWFRGGSVIIITTASKNLPMLYRTDSVFQVELIMNTDESLELLSWHAFREAKPKEDYLFLAERVVAYCGGLPLALEVIGSYLYQRTKKEWNRVLLKLKKIPEFIKFDQILKISFDGLCNQMEKDLFLDLCCSFVGKGRACVTKILNGCGIDADSGIRVLIERSLIRVNKNNKLGMHPLLREMGRNIIGEIIDEDMKHATLFSSPGTRFI* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0280 519 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Pvu10g0280 519 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 503 IPR044974 GO:0006952
Pvu10g0280 519 Gene3D - 7 175 IPR035897 -
Pvu10g0280 519 SUPERFAMILY "Winged helix" DNA-binding domain 417 497 IPR036390 -
Pvu10g0280 519 Gene3D - 343 428 IPR042197 -
Pvu10g0280 519 PRINTS Disease resistance protein signature 210 225 - -
Pvu10g0280 519 PRINTS Disease resistance protein signature 285 299 - -
Pvu10g0280 519 PRINTS Disease resistance protein signature 378 392 - -
Pvu10g0280 519 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 503 - -
Pvu10g0280 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 439 IPR027417 -
Pvu10g0280 519 Pfam NB-ARC domain 192 409 IPR002182 GO:0043531
Pvu10g0280 519 SMART till_3 13 153 IPR000157 GO:0007165
Pvu10g0280 519 Pfam TIR domain 14 179 IPR000157 GO:0007165
Pvu10g0280 519 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Pvu10g0280 519 Gene3D - 176 334 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0280 Pvu-Chr10 3938344 3940623 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0280 14 497 WRKY Transcription Factor Family AT4G12020 27.992 5.44e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0280 - - pvu:PHAVU_010G026900g 1043.49