Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0273 ATGGAGTCCGCATCTTCTGCGCCATCGTTCGCAAAATCGAAACACCAGCGGATACACGACGTCTTCATCAACTTCAGGGGAGAAGACACACGCAGGAAGTTCGTTTCTCATCTTCACTATGCCCTCTCAAATGCTGGAGTCAACACCTTCTTTGACGAGGCCAATCTTGTCAAGGGAATGCAGCTTCAAGAACTCATGCGAGCAGTGGAAGGATCTCAGATAGCGATTGTGGTTTTCTCCCAAACCTACACTGAATCAACTTGGTGTCTTGATGAGCTTGAGCAAATCATCAAATGCAACCAAACTCAAGGCCAGAGTGTTCTCCCTGTGTTTTACGAGATTGACCCTTCCGACGTGCGTCATCAGAAGGGTGATTTTGGAAAATCGTTGGAGGAAGCCGCGCAGAGAAGCTTTTCAGGAGAGCAACTGGAGCAGGCGTTGTCCAGGTGGAAGGGTGCGCTGAACAAAGCTGCGGGTATCAGTGGTTGGGATGTCAGAAATTTCAGGAATGAAGCTGAACTAGTGAAACAAATTGTTAACCGCGTTCAGACATTACTGGACTACGAAGTCTTGTCTATTACAGAATATCCTGTTGGACTAGAATCCCGTGCGCGAGAAGTGATTGGACGCATTGAAAAGCGTTCTACCCAAGTCTGCATGATAGGGATTTGGGGTATGGGGGGGTCGGGGAAAACTACCGTTGCCAAGGCCATCTACAATCAGATTCATCGTAGATTCATGGATAAAAGTTTCATTGAGAATATCAGAGAAACTTGTGAAATGCATGGTAGAGGGTATGTACCTTTGCAAGAACAGCTTCTTTCAAATATCCTAAAAACAAAGGTGGAGATACATAGTGTTGGGATGGGGACGACTATGATTGAGAAAAGACTTGCTGGAAAAACGGCACTCATTGTACTTGATGATGTTGATGAGTACAGCCAATTAAAAGCTCTGTGTGGAAATCGTAAATGGATTGGTCAAGGAAGTGTAATAATCGTTACAACTAGAGATTTTGGCCTCCTTAATAGACTAGAAGTTGATTATGTTTATCAGATGGATAAAATGGATGAAAACGAGTCCCTTCAGCTTTTCAGTTTTCATTGTTTTGGAGATGCAAAACCAAGAGCAGACTTTAGTGAACTTGCCAGTAACGTTGCTGCTTATTGTGGAGGACTACCTCTGGCTCTTGAAGTGCTCGGTTCTTATTTATTTGACAAGACGTCAACGAGAGTGTGGGAAAGTGTATTGTCGAAACTAGAAAAAATTCCCAATGATCAGGTTCAACGGAAATTAAGAATAAGCTTTGATAGTTTAAGCAATGACATGGAGAAGGATATATTTCTTGATATATGTTGCTTCTTTATTGGTAAAGACAGAGGCTATGTCACGGAGATACTAAATGGTTGTGAACTATATGCTGATGATGGGATACCAGCTCTCATAGAACGTAGCCTCATAAAAGTAGAAAAGAACAACAAACTTGGAATGCATCCTTTGCTACAAGAAATGGGAAGAGAGATAATACGTGAAAACTCAAGAAAGGAACCTGGCAAGCACAGTCGATTGTGGTTTCAAAAGGATGTAGTTGAAGTATTAACAAAGAATGCTGGGACAGAAGCTATTGAGGGATTGGTTTTGAAATTGCATTTAACCAGCAGAGATTGTTTCGAAGCCGATTCTTTCCAGAAAATGGAGAGATTGAGACTCTTGCAACTTCATCATGTACAACTTGCTGGAAATTATGGGTTCCTTTCTAAGCAACTGAGATGGATCTCTTGGCAAGGCTTTCCTTCAAGTTGTCTGCCAATCAACTTTTGTATGGATGATGTAATTGCGATTGATTTAAAACACAGTCATCTTCGATTCGTCTGGAAACAATCCCAGGTTTTGAGGTGGCTAAAAGTCCTTAATCTCAGTCACTCCATGTACTTGACAGAAACCCCTGTCTTTTCGAGATTACCAAGTCTTGAGCAGCTCATTCTCAAAGACTGTCCCAGTTTATTAGAGATAGATAAATCCATTGGAGATCTGTGTAATATTTTATTGATAAATTTGAAGGATTGTACAGGCCTAAGAAATCTCCCTTGA 2091 0.4165 MESASSAPSFAKSKHQRIHDVFINFRGEDTRRKFVSHLHYALSNAGVNTFFDEANLVKGMQLQELMRAVEGSQIAIVVFSQTYTESTWCLDELEQIIKCNQTQGQSVLPVFYEIDPSDVRHQKGDFGKSLEEAAQRSFSGEQLEQALSRWKGALNKAAGISGWDVRNFRNEAELVKQIVNRVQTLLDYEVLSITEYPVGLESRAREVIGRIEKRSTQVCMIGIWGMGGSGKTTVAKAIYNQIHRRFMDKSFIENIRETCEMHGRGYVPLQEQLLSNILKTKVEIHSVGMGTTMIEKRLAGKTALIVLDDVDEYSQLKALCGNRKWIGQGSVIIVTTRDFGLLNRLEVDYVYQMDKMDENESLQLFSFHCFGDAKPRADFSELASNVAAYCGGLPLALEVLGSYLFDKTSTRVWESVLSKLEKIPNDQVQRKLRISFDSLSNDMEKDIFLDICCFFIGKDRGYVTEILNGCELYADDGIPALIERSLIKVEKNNKLGMHPLLQEMGREIIRENSRKEPGKHSRLWFQKDVVEVLTKNAGTEAIEGLVLKLHLTSRDCFEADSFQKMERLRLLQLHHVQLAGNYGFLSKQLRWISWQGFPSSCLPINFCMDDVIAIDLKHSHLRFVWKQSQVLRWLKVLNLSHSMYLTETPVFSRLPSLEQLILKDCPSLLEIDKSIGDLCNILLINLKDCTGLRNLP* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0273 696 Gene3D - 184 350 IPR027417 -
Pvu10g0273 696 SUPERFAMILY L domain-like 547 696 - -
Pvu10g0273 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 451 IPR027417 -
Pvu10g0273 696 Gene3D Ribonuclease Inhibitor 522 696 IPR032675 -
Pvu10g0273 696 ProSiteProfiles TIR domain profile. 17 186 IPR000157 GO:0007165
Pvu10g0273 696 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 696 IPR044974 GO:0006952
Pvu10g0273 696 SUPERFAMILY "Winged helix" DNA-binding domain 427 533 IPR036390 -
Pvu10g0273 696 Gene3D - 355 440 IPR042197 -
Pvu10g0273 696 Pfam TIR domain 19 182 IPR000157 GO:0007165
Pvu10g0273 696 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 22 696 - -
Pvu10g0273 696 Gene3D - 11 183 IPR035897 -
Pvu10g0273 696 SMART till_3 18 160 IPR000157 GO:0007165
Pvu10g0273 696 PRINTS Disease resistance protein signature 220 235 - -
Pvu10g0273 696 PRINTS Disease resistance protein signature 297 311 - -
Pvu10g0273 696 PRINTS Disease resistance protein signature 390 404 - -
Pvu10g0273 696 PRINTS Disease resistance protein signature 652 668 - -
Pvu10g0273 696 Pfam NB-ARC domain 204 430 IPR002182 GO:0043531
Pvu10g0273 696 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 163 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0273 Pvu-Chr10 3875269 3877859 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0273 8 696 WRKY Transcription Factor Family AT4G12020 27.809 1.32e-71 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0273 - - vun:114167037 1127.85