Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0272 ATGGAAACGGAATCGTCTTCGCCATCATCCAAATCCGAATGGAAATACGACGTGTTCATCAATTTCAGGGGAGTAGACACCCGCCGGAAGTTCGTTTCTCATCTCCATTCTGCTCTCTCAAAAGCTGGAGTCAAAACGTTCCTTGACGAGGAGAATCTGCTGAAGGGAATGGAGCAGCAAGAACTATTGCGAGCAATACAAGTGTCTCAGATAGCAATAGTTGTTTTCTCCAAAAGATACGCTGAATCTAGTTGGTGTCTTGATGAGCTTGAAAAAATCTTTGAATGTCGCCAAACTTGTTGCCAAAAAGTTTTACCTGTATTTTACTATGTTCAACCATCCGAGGTACGAGAGCAGACGGGTGATTTTGGAGATGTGTTGAGAGCAGCTGCAGAAAATAGGTATGAAGATACGTTGTTGAGGTGGAGCCTTACACTCACCAAAGCTGCAAATTTGGCGGGGTGGGATGTCAGGAAAAGCAGGTCTGAAGCTGAGCTAGTGGGTGACATTGTTAAAGACGTTATTAACAAACTTGATTACAATGTCTTGTCTATCACGGAATATCCTGTTGGATTAGATCATCGAGTGCAAGAAGTGATTAGATTTATTGAAAGAACCAAAAATTCTTGTAGGATAGGGATATGGGGAATGGGAGGATCTGGTAAAACTACCATTGCTAAAGCCATCTACAATAAACTTCATCGTTTATTCGACAATAAAAGTTGCATTGAAGATATTAGAGAAGTTTGTCAAACAGAGAGAAGAGGGCTCGTTCGTTTGCAGGAAAAACTTCTTTCAGATGTCCTGAAAGCAAAGGTGGAGATTCAAAGCGTTGGAATCGGACAAAGTATGATTGACAACCGATTTATTGGAAAAAGGGCGCTTATTGTTCTTGATGATGTGAATGAGTTTGACCAACTAGAAGCTCTATGTGGAAATACTCAGTGGATTGGTGAAGCAAGTGTAATAATCATTACAACTAGCGATCTGCATCTGCTGAAGAGATTTGAAGTTGATTATGTTTATGAAATGAAGGAAATGGAAGCAAATGAGTCACTTGAGCTTTTTAGTTGGCATGCTTTCAGAGAAGCAAAACCAAGAGAAGATTTCAATGAACTTGCAAAAAAAGCAGTTGATTATTGTGGAGGACTACCACTAGCTCTTGAAGTCCTTGGTTCTTATTTGAGAAAGAGGACAGTGACTGAGTGGAGAAGTGTGTTGTCAAAGCTAAAAATAAGTCTCAATGCCCAAGTCCAAGCGAAACTAAGAATAAGCTTTGAGAATTTATTGGATCAAATGGAAAAGGATATATTTCTTGATGTGTGTTGTGTCTTTATAGGTAAGGACAGAGGCTGTGTGACCGAGGTACTAAACGGCTGTGGACTATATGCTGATATTGGAATAACAGTCCTCTTAGAGCGTAGCCTCATAAAAGTCGAAAAGAACAACAAACTCATAATGCATCCTTTGTTACGAGACATGGGAAGAGAGATTATTCGTGAAGGTTCAAGAAAAGAACCTGGGAAGTGCAGTAGATTGTGGTTTCAAGAGGATGTACGTGATGTATTGACAAATAGTACTGGGACAGATGCTGTTGAGGGATTGGCTCTGAAATTGAATTTAACCAACAGAGAATGCTTTAAAGCAGATACTTTTGAGGAAATGAGGAGTTTGAGACTGTTGCAACTTCATCATGTAGAACTCACGGGAGATTATGGCTATCTTTCTAAGCAATTGAGATGGATCTATTGGCAAGGGTTTCCTTCAACATACATACCTAACAACTTCTATCTGGGAGATGCAATTGCAATTAATTTGAAACACAGTAATCTTAGACAAGTATGGAAAGAACCCAAGGCTTTACACATGTTAAAGTTCCTCAATCTTAGTCATTCCAAGAACTTGACAGAAACCCCTGACTTTTCTGGACTACCAAATCTTGAAAAGCTCGTTCTCAAATATTGTCCAAGTTTGTGCTGTGTACACAAATCCATTGGAGATCTCAGTAATATTGTGTTGATAAATTTGAAGGAGTGTACAAGCCTAAGCAATCTTCCGAGAGAGATATATAAGTTGAAATCTTTGAAAACTCTCATCCTATCTGGTTGTTCGAAGATTGACAAATTCGAAGAAGATATAGGGCAGATGGAATCCTTGACAACTCTAATTGCTGAAAATGCTGTTGTGAAACAAGTGCCCTTTTCAATAGTAAGCTCAAAAAGCATTGGATTTCTATTCCTACGTGGGAATGAAGGATTGTCGCATGATATTTTACGTCCTATTATTTGGTCCTTGATGTCACCGACAATGAATCCCCTGTCTCGTATTCTTCCGTTATGTGGCATATCAGCATCTCTAGATTCAATGAATATGCAGAATATTGATTTGGGTGACCTAGCACCGATCCTTACCAACCTTTTAAATCTTCGAAGTGTTTTGGTGCAATGTGACACGGAGTTTCAAATAACTAAAGTAAGAAAGTTTTTGAACGACGTACATGGGATACATTTCACTGAGTTAGAAATAGCACCAGGTACATTAGAAACTTCAGACAATTCCTTGAGATCTTATTTGATTGGAATGGGAAGCTACCGAGAAGAAGACTTCAATACTCTTAACAAGAGCATATCTAAGGAATTGGGAACTGGTGGATCTTGTAATGTTTTTCTGCCAAGAGACAATCATCCTTTTTGGATGGCCCATATGGGCGAGGAACATTCAGTGCATTTCACTGTGCCTCAGGATTGGGACAGGATGGGAATGGTTTTGTGTGTTGTGTATTTATCAACACCTGAAACCGTGGCAACTGACTGTCTTATTAGTGTCTTAATGGTTAATTACACAAAGTGTACCATACATATATACAAGCGAGACACAGTAATTTCCTTTAATGATGCAGATTGGCAGAGCATAATATCTCATTTGGGAGCTGGAGACAAGGTGGAGATTTTTCTGTCTTTCAGGAATGAATTGGTGATGAAAAGGGGAATTGTCTATCTCACGAATTATGAATTCATTGACATGGAAATGAAAGCTGTTAGTAAACCACCTGTTATGGAGATTTATAGTTTGAAGAGGAATCTTAAGGGTCAAGAAAGCAGCCGGAAGAGAAAATGGTAA 3120 0.3913 METESSSPSSKSEWKYDVFINFRGVDTRRKFVSHLHSALSKAGVKTFLDEENLLKGMEQQELLRAIQVSQIAIVVFSKRYAESSWCLDELEKIFECRQTCCQKVLPVFYYVQPSEVREQTGDFGDVLRAAAENRYEDTLLRWSLTLTKAANLAGWDVRKSRSEAELVGDIVKDVINKLDYNVLSITEYPVGLDHRVQEVIRFIERTKNSCRIGIWGMGGSGKTTIAKAIYNKLHRLFDNKSCIEDIREVCQTERRGLVRLQEKLLSDVLKAKVEIQSVGIGQSMIDNRFIGKRALIVLDDVNEFDQLEALCGNTQWIGEASVIIITTSDLHLLKRFEVDYVYEMKEMEANESLELFSWHAFREAKPREDFNELAKKAVDYCGGLPLALEVLGSYLRKRTVTEWRSVLSKLKISLNAQVQAKLRISFENLLDQMEKDIFLDVCCVFIGKDRGCVTEVLNGCGLYADIGITVLLERSLIKVEKNNKLIMHPLLRDMGREIIREGSRKEPGKCSRLWFQEDVRDVLTNSTGTDAVEGLALKLNLTNRECFKADTFEEMRSLRLLQLHHVELTGDYGYLSKQLRWIYWQGFPSTYIPNNFYLGDAIAINLKHSNLRQVWKEPKALHMLKFLNLSHSKNLTETPDFSGLPNLEKLVLKYCPSLCCVHKSIGDLSNIVLINLKECTSLSNLPREIYKLKSLKTLILSGCSKIDKFEEDIGQMESLTTLIAENAVVKQVPFSIVSSKSIGFLFLRGNEGLSHDILRPIIWSLMSPTMNPLSRILPLCGISASLDSMNMQNIDLGDLAPILTNLLNLRSVLVQCDTEFQITKVRKFLNDVHGIHFTELEIAPGTLETSDNSLRSYLIGMGSYREEDFNTLNKSISKELGTGGSCNVFLPRDNHPFWMAHMGEEHSVHFTVPQDWDRMGMVLCVVYLSTPETVATDCLISVLMVNYTKCTIHIYKRDTVISFNDADWQSIISHLGAGDKVEIFLSFRNELVMKRGIVYLTNYEFIDMEMKAVSKPPVMEIYSLKRNLKGQESSRKRKW* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0272 1039 Gene3D - 347 430 IPR042197 -
Pvu10g0272 1039 Pfam NB-ARC domain 195 427 IPR002182 GO:0043531
Pvu10g0272 1039 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 1001 IPR044974 GO:0006952
Pvu10g0272 1039 SUPERFAMILY "Winged helix" DNA-binding domain 418 523 IPR036390 -
Pvu10g0272 1039 Pfam TIR domain 15 180 IPR000157 GO:0007165
Pvu10g0272 1039 Gene3D - 179 341 IPR027417 -
Pvu10g0272 1039 PRINTS Disease resistance protein signature 211 226 - -
Pvu10g0272 1039 PRINTS Disease resistance protein signature 288 302 - -
Pvu10g0272 1039 PRINTS Disease resistance protein signature 381 395 - -
Pvu10g0272 1039 PRINTS Disease resistance protein signature 690 706 - -
Pvu10g0272 1039 Gene3D Ribonuclease Inhibitor 532 862 IPR032675 -
Pvu10g0272 1039 SUPERFAMILY L domain-like 537 814 - -
Pvu10g0272 1039 ProSiteProfiles TIR domain profile. 14 178 IPR000157 GO:0007165
Pvu10g0272 1039 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 155 IPR035897 -
Pvu10g0272 1039 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 1001 - -
Pvu10g0272 1039 SMART till_3 15 152 IPR000157 GO:0007165
Pvu10g0272 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 440 IPR027417 -
Pvu10g0272 1039 Gene3D - 9 178 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0272 Pvu-Chr10 3860208 3864654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0272 8 736 WRKY Transcription Factor Family AT4G12020 30.106 3.07e-81 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0272 - - gmx:100815297 1310.05