LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g0266	ATGGAATTGAAGTCTTCATCATCCAAACTCCCACGGATGTACGATGTGGTCATAAACTTTAATGGAGAAGACATTCAAAGGAAATTTGTTTCTCATCTCGATTCTGCCCTCTCTGCTGTTGGCTTCACCACTTTCCTTCACCACCCCAATGCTCTCAACCCAATTCACTTCCAACAACCTATTCTCAATCTCTCTCGTGTAGCCATGGTTGTTTTCACCAAATCCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATCAAATGGCACCAAACTTATTGCCGGCATGTTCTGCCCGTTTATTACGAAATCCAGCCATCTGATGTTCGTCTTCAGATGGGTGATTTTGGTGAAGCCTTCAAAGCAACTGCTCAGCAAACATTCTCAGGACAACAACTGGAGCATGGCATGTGGAGGTGGAGCTACGCACTCACCAAAGCTGCAAATTTATTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGACCATTCTTAATTTACCACTCTTGTCTGCTACTAAATTTCCAGTTGGTTTACAATCCCGTGTGGAAGATGTGATTCGAACCATCAAAAATAAATCCACGCAAGTTTTTACGATAGCGATATGTGGAATGGAAGGATCTGGTAAAACCACCATTGCCAAAGCCATCTACCATCAAATTCATGGTTCATTCCAGGAGAAAAGTTTCATCGAAGATATTGCACAAGTTAGTCGAACGAGAGGGGATGTTCATTTACAAGGACAACTTCTTTCAGATTTCTTAAAAACAAAGGTGGAGATAGATAGCGTTGAGATGGGAACAAGTATGATTAGGGAAAGACTTGCTGGGAAAAGAGTGCTCATTGTACTTGACGATGTGAATCTCTATTGTCCCTTATTATTAGACCTATGGGAAAGTCGTGCATGGTTCGGTGAAGGAACTGTAATAATCATTACAACCATAGATGAAGACCTACTCAGGATACATCAAGTTGATTCTGTTATTCGTATAAAGCTAATGAACGCAAACGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAAGAATATCATTTCCTTGCAGAAAGAGTTGTTACTTATTGTGGAGGACTATCTCTAGCTCTTGAAGTCATTGGAACTTATTTACATGAAAGGACGAAAAAAGAATGGACTACAGTATTGTTACGATTAGACAATATTTCCCAGCACGATCTTCAACGGAAATTGAAAATAAGCTTCGACGGTTTACGCAATGAAATTGTAAAAGATTTATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAAGGCAGAGCTTATGTTACCAAGATCTTAAGTAGGTGTGGAGCAGACGCTGATAGTGGAATAAGACTTCTCATAGAGCGTAGCCTCATACAAGTTAAAAACAACAACAAATTAGGAATGCATTCTTTGCTACGAGAAATGGGAAGAGAAATTATTCGTGAAATTTCAAGACAGGATTCTGGGAAGAACAGTCGACGCTGGATTGATGAGGATGCGGGATATGTATTGACAGATACCACAGGTACAGAAGCCATTGACGGATTGTTTGTGAAACTGCGTTCTTCCAAATCAAGACTGCTGCGACAAGATCAAATACAACTTGCTGGAAATTATGTTCATCGTTATAAGAATCTGAGATGGATCAGTTTGCACGGGTTTTCTTCAGAATACCTACCTAACCACTTTTATCTGCATGATGCAGTAGCCATTGATTTAAAACACAGTCTTCTTCAATTCGTCTGGAAAGAAGCCAAGGTTTTGAGGTGGCTAAAAGTCCTTAATCTTAGTCACTCCGTGTACTTGACTGAAACCCCCGACTTTTCTGGATTACCAAGTCTTGAACAGATCATTCTGAAAGATTGTCCAAGATTGCGCGAAGTACACCAATCTATTGGATGTCTCTGCAATCTTATACTGCTAAATTTGAAGGACTGTACAAGTCTAAACACTCTCCCCAGAGAGATATATAAGTTGAAATCTTTAAATACTCTCATTCTCTCTGGTTGTTCCAAGATTGAAATATTAGAAAAAGATATAGTGCAAATGGAATCCTTGATAACACTAATTTCTGAAAATATAACTGTTAAACAAGTGCCTTTTTCAATTGTAAGCTCAAAATGCATTGGATATATATCTCCACGTGAATTTGAGGGATTGTCACATAATATTTTCTCTTCTATCATTCGGTCTTGGATGTCACCAACTATTAATCCCCTATCTTATATTCATTTTTGCACGGATATGGAAGATAATAGTTGGGATGATATTGCGCCATTGCTTAGCAGCCTTGCAAATCTTCGAAGTGTTTTGGTGCTATGTGACTCTCAGTTTCAACTATCTAAGCAAGTAGAAACTATTCTGATCGATTATGGTCTAAGTACTACAGAATCAGGAATTTCAAAGGAGCACTTAAGATCTTCTGTGATTGGTCTTGGAAGATACAATGAATTCTTCAATACTGCCAGCAATAGCATATCAGAGGCTTCGAGAAGCAGTGATTCTAGTGAAGTTTCTCTCCCGGGTGACAACGATCCTTATTGGTTGAGCCATAAAGGTGAGGGACATTCTGTTTCTTTCACTGTAGCTGGAGATCGTGAAATGAAGGGAATGGCTTTGTGGGTTGTTTATTTCTCAAATCATGAAATCATTGAACCTGAATGTCTTGATAGTGTCTTAATTGTTAATTACACAAAGTGCACATGCCTGATACACAATCGATGGACCGTAATTTCCTTTAATGATGAAGATTGGCATGGGATAATGTCAAATTTAGGATATGGAGACAAGGTAGAGATTTTTGTGACTTTTGGTTATGGATCGGTGGTGAAGAACACAGCTGTCTATTTGATATACGGTGAATCAAATGACTTTGAAAGAGAGCCCACCAAAGAAAAATTCCCTCATTAG	2961	0.3887	MELKSSSSKLPRMYDVVINFNGEDIQRKFVSHLDSALSAVGFTTFLHHPNALNPIHFQQPILNLSRVAMVVFTKSYSQSAWCLHQLQQIIKWHQTYCRHVLPVYYEIQPSDVRLQMGDFGEAFKATAQQTFSGQQLEHGMWRWSYALTKAANLFGWDESNYRSDAELVDKIVKTILNLPLLSATKFPVGLQSRVEDVIRTIKNKSTQVFTIAICGMEGSGKTTIAKAIYHQIHGSFQEKSFIEDIAQVSRTRGDVHLQGQLLSDFLKTKVEIDSVEMGTSMIRERLAGKRVLIVLDDVNLYCPLLLDLWESRAWFGEGTVIIITTIDEDLLRIHQVDSVIRIKLMNANESLELLSWHAFREAKPKEEYHFLAERVVTYCGGLSLALEVIGTYLHERTKKEWTTVLLRLDNISQHDLQRKLKISFDGLRNEIVKDLFLDVCCFFVGKGRAYVTKILSRCGADADSGIRLLIERSLIQVKNNNKLGMHSLLREMGREIIREISRQDSGKNSRRWIDEDAGYVLTDTTGTEAIDGLFVKLRSSKSRLLRQDQIQLAGNYVHRYKNLRWISLHGFSSEYLPNHFYLHDAVAIDLKHSLLQFVWKEAKVLRWLKVLNLSHSVYLTETPDFSGLPSLEQIILKDCPRLREVHQSIGCLCNLILLNLKDCTSLNTLPREIYKLKSLNTLILSGCSKIEILEKDIVQMESLITLISENITVKQVPFSIVSSKCIGYISPREFEGLSHNIFSSIIRSWMSPTINPLSYIHFCTDMEDNSWDDIAPLLSSLANLRSVLVLCDSQFQLSKQVETILIDYGLSTTESGISKEHLRSSVIGLGRYNEFFNTASNSISEASRSSDSSEVSLPGDNDPYWLSHKGEGHSVSFTVAGDREMKGMALWVVYFSNHEIIEPECLDSVLIVNYTKCTCLIHNRWTVISFNDEDWHGIMSNLGYGDKVEIFVTFGYGSVVKNTAVYLIYGESNDFEREPTKEKFPH*	987

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g0266	986	Gene3D	Ribonuclease Inhibitor	545	717	IPR032675	-
	Pvu10g0266	986	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	156	IPR035897	-
	Pvu10g0266	986	CDD	AAA	195	344	-	-
	Pvu10g0266	986	Gene3D	-	176	340	IPR027417	-
	Pvu10g0266	986	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	967	IPR044974	GO:0006952
	Pvu10g0266	986	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	17	967	-	-
	Pvu10g0266	986	PRINTS	Disease resistance protein signature	210	225	-	-
	Pvu10g0266	986	PRINTS	Disease resistance protein signature	285	299	-	-
	Pvu10g0266	986	PRINTS	Disease resistance protein signature	379	393	-	-
	Pvu10g0266	986	PRINTS	Disease resistance protein signature	674	690	-	-
	Pvu10g0266	986	SMART	till_3	13	153	IPR000157	GO:0007165
	Pvu10g0266	986	SMART	AAA_5	207	346	IPR003593	-
	Pvu10g0266	986	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	171	438	IPR027417	-
	Pvu10g0266	986	Gene3D	-	7	175	IPR035897	-
	Pvu10g0266	986	Pfam	TIR domain	14	182	IPR000157	GO:0007165
	Pvu10g0266	986	ProSiteProfiles	TIR domain profile.	12	179	IPR000157	GO:0007165
	Pvu10g0266	986	Pfam	NB-ARC domain	192	411	IPR002182	GO:0043531
	Pvu10g0266	986	Gene3D	-	345	428	IPR042197	-
	Pvu10g0266	986	SUPERFAMILY	L domain-like	485	785	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g0266	Pvu-Chr10	3786002	3790114	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g0266	14	690	WRKY Transcription Factor Family	AT4G12020	28.312	5.83e-60	222

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g0266	-		-	vun:114165123	1280