Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0259 ATGGAAAATCAGTTCTTTCTCAATGATGGGGTGTCACAAACACAGCATCATCCCCTTCACTTTCAACCCTCACCACCACCACCTTCTTCACTGCCCTCTTGGCAATCACTCTCACCCACCATGGGAATTCAACCAACACTTCTGAATTCTGCCTCTGACCAAACCCAGGATTGCTTTTACAACCCCAGTTGGGACAAGTCAGCAGATCATCATGGACTTCACTTTGATTCCTCAGAACTCAGTTCAATGGTCTCATCTCCTGCAGCATCATCCAACCCCAACAGCAACAGCAACATGTCCAATGAGAATTTCATCATCAGGGAATTGGTGGGGAGATTGGGGGCTATTGGGAGCTCTGATGAGATCCCACACCACTCTCCTCACCCTTTGGTTGTGGCCTCTTCTTACATGAATAATGGCAGTATCAGCCCCAACACTTCGTGTTACACCACCCCTTTGAGTTCCCCTCCAAAGGTTAAGACTGTCCAGAGTTTGGTGAACGAGAGGTTGGCAAATTTGGGAGGAAAGTCAATGACTTTGAATTCCAGTGTGGCTGAATTCTCAGCTGACCCTGGCTTCGCTGAGAGGGCAGCAAAGTTTTCTTGCTTTGGCAGCAGGAGTTTCAATGGTAGGAATGTCCAATTGGGGGTGAACAACGGTGAATTGGCTCAAAGATCTGCTCCAGTGGTGGAAAATGGTGGAAAGTTATCTAGAATCTCAAGTAGTCCTTTGCTTATGACACTTGGATCTCAAATGGGTACCCAAGAGAACAAGAATTCAGCAATTCAGGACCAGGAGAAAATGGAAGTTACCAATTCTCAAGAGGAATCTACAATATCTGAGCAAACACCGAATGGAGAAATTGGGATGAAAATTCACCAAGATATGACGAATTCCAGGAAAAGAAAAGCATCTTCCAAAGGAAAAACCAGAGAAACTTCTAACTCCATCAATCCCTCCAAGGGTGTTGAAGTCAATGAGGATTCAAATTCAAAGCGCACCAAGCCAAATGATGGTGAGGGAAATGAAAAAGGGCCAGTGAAGGTTGAGGAAGAGTCCAAAGCAGTGGAAGAGAAACAGAACAAAAGCAACTCAAAACCTCCTGAGCCACCAAAAGATTACATTCATGTGAGAGCAAGAAGAGGCCAAGCCACTGACAGCCATAGTCTTGCAGAACGTGTACGGAGGGAGAAAATCAGTGAACGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGCAAAGCACTTATGCTGGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTCCTGTCTATGAAGTTGGCTTCTGTTAACACAAGGATGGATCTTGGTATTGAGAATCTTGTTTCAAAAGATGTATTTCAATCTAATAATTCTTTGGCAACACACCAAAATCCAATATTCCCTCTAGATTCCTCAGCACAAGCCTTTTATGGGCACCAGCCTCAGCAAAACCCAGTTATCCATAATAACATACCTAACAGAACGGTGACCCACTGCTCAGTGGACCCATTAGACACATCTTTGTGCCAAAATCTTGCCTTGCAATTACCTCCCCTAAATGGGTTTAGTGAAGTTGGCTCTCAGTTTCCATTAACATTCTGTGAGGATGATCTCCACACCATTGTGCAGATGGGGTTTGGCCAAACTGCAAACTGGAAAACACCAATTCAATCCCCAAGTTTCAACGGTTCAAATAATGTACCCCAGATGAAAGTTGAGCTCTGA 1758 0.4437 MENQFFLNDGVSQTQHHPLHFQPSPPPPSSLPSWQSLSPTMGIQPTLLNSASDQTQDCFYNPSWDKSADHHGLHFDSSELSSMVSSPAASSNPNSNSNMSNENFIIRELVGRLGAIGSSDEIPHHSPHPLVVASSYMNNGSISPNTSCYTTPLSSPPKVKTVQSLVNERLANLGGKSMTLNSSVAEFSADPGFAERAAKFSCFGSRSFNGRNVQLGVNNGELAQRSAPVVENGGKLSRISSSPLLMTLGSQMGTQENKNSAIQDQEKMEVTNSQEESTISEQTPNGEIGMKIHQDMTNSRKRKASSKGKTRETSNSINPSKGVEVNEDSNSKRTKPNDGEGNEKGPVKVEEESKAVEEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLGIENLVSKDVFQSNNSLATHQNPIFPLDSSAQAFYGHQPQQNPVIHNNIPNRTVTHCSVDPLDTSLCQNLALQLPPLNGFSEVGSQFPLTFCEDDLHTIVQMGFGQTANWKTPIQSPSFNGSNNVPQMKVEL* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0259 585 Pfam Helix-loop-helix DNA-binding domain 387 434 IPR011598 GO:0046983
Pvu10g0259 585 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 578 IPR024097 GO:0006355
Pvu10g0259 585 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 383 433 IPR011598 GO:0046983
Pvu10g0259 585 MobiDBLite consensus disorder prediction 1 47 - -
Pvu10g0259 585 SMART finulus 389 439 IPR011598 GO:0046983
Pvu10g0259 585 Coils Coil 430 450 - -
Pvu10g0259 585 MobiDBLite consensus disorder prediction 326 374 - -
Pvu10g0259 585 MobiDBLite consensus disorder prediction 253 374 - -
Pvu10g0259 585 MobiDBLite consensus disorder prediction 1 19 - -
Pvu10g0259 585 CDD bHLH_AtBPE_like 373 458 - -
Pvu10g0259 585 PANTHER BHLH TRANSCRIPTION FACTOR 2 578 - -
Pvu10g0259 585 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 381 451 IPR036638 GO:0046983
Pvu10g0259 585 MobiDBLite consensus disorder prediction 253 287 - -
Pvu10g0259 585 MobiDBLite consensus disorder prediction 310 325 - -
Pvu10g0259 585 Gene3D - 380 453 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0259 Pvu-Chr10 3629864 3633299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0259 1 544 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.316 3.48e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu10g0259 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0259 - - gmx:100801233 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1380 8 20993211 20996126 Pvu10g0259 10 3629864 3633299 PCT