Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0256 ATGGACGACGATTTTGACATGCCGCCGGCGGATTCCATGAACGACGACTTCAACTTCGGCGGCGACCTCGAAACTCCCGTCCTCAAGGTCGGCGAGGAGAAGGAAATTGGGCAACAGGGCTTGAAGAAGAAACTCCTAAAGGAAGGTGAAGGATGGAATACTCCTGAAGTTGGTGACGAGGTTCAAGTTCACTACACTGGGACGTTGCTTGATGGTACTAAGTTTGATTCCAGCAGAGATAGGGGAACTCCTTTCGGTTTCACCCTTGGACAAGGGCAAGTTATTAAAGGATGGGATCAAGGTATTGTAACGATGAAGAAAGGTGAAAATGCCCTTTTTACCATCCCAGCCGAGCTAGCATACGGTGAATCTGGTTCTCCTCCAACTATTCCCCCCAATGCAACTCTTCAATTTGACGTGGAGCTATTGTCTTGGACTAGTGTGAAGGACATATGTAAAGATGGAGGTTTATTTAAGAAGATAGTCACTGAGGGGGAAAAATGGGAGAATCCCAAGGATCTTGATGAAGTTTTAGTGAATTACGAAGCACGTCTTGAAGATGGGACTCTAGTAGCAAAATCTGATGGAGTGGAGTTCACAGTCGAAGATGGTTATTTTTGTCCTGCTTTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTGAGTGTGAAGCCTCAATATGGATTTGGTGAAAAGGGTAAGCCAGCACATGGTGACGAAGGTGCAGTTCCACCAAATGCATCATTGGAGATTACTCTTGAGTTAGTTTCTTGGAAGACTGTGTCAGATGTAACTGATGACAAGAAGGTCATTAAGAAGATCCTCAAGGAAGGGGAAGGGTATGAGCGTCCAAATGAGGGGGCAGTTGTGAAATTGAAAGTAATTGGTAAGCTGCAAGATGGTACTTTGTTTTTGAAGAAGGGTCATGATGATGAAGGGGAGCTGTTTGAATTCAAAACTGATGAGGAACAAGTAATTGATGGGCTTGACAGAGCTGTTTTGACTATGAAGAAGGGTGAGGTGGCTTTGTTAACTATTGCGCCTGAGTATGGTTTTGGCTCATCAGAGTCTCAACAGGAACTTGCTGTGGTTCCTTCTAACTCCACTTTGTATTACGAGGTTGAGCTAGTATCGTTTGAGAAGGAAAAGGAGTCATGGGACATGAACACACCAGAGAAGATTGAGGGTGCTGGTAATAAGAAAGAAGAAGGAAATGCATTATTTAAAGCTGGTAAATATGCAAAAGCTTCTAAAAGATATGAAAAGGCTGTAAAGTTCATAGAGTACGATACCTCCTTCAGTGTAGAGGAGAAGAAGAGCTCCAAGACCTTGAAGGTTGCCTGTAATCTAAATAATGCAGCATGCAAGTTGAAGCTAAAAGATTACAAACAAGCAGAGAAATTGTGCACAAAGGTACTGGAACTTGAGAGCACTAACGTGAAGGCTCTATATAGAAGGGCCCAGGCATACATCCAGTTGGCTGATTTAGATTTGGCTGAAATTGATATTAAGAAAGCGCTTGAGCTCGACCCTGACAATAGGGAAGTCAAGCTTGAGTACAAGACCTTGAAGGAAAAGATGAAGGAATACAACAAAAAGCAGGCAAAATTTTATGGAAATATGTTCAACAAACTGCATAAGCTAGATTCTTTGGACAATAACAAAGCAGAGTCGAAGGATGCCCAACCCATGAATGTCGACAGCAAGGCATAA 1725 0.429 MDDDFDMPPADSMNDDFNFGGDLETPVLKVGEEKEIGQQGLKKKLLKEGEGWNTPEVGDEVQVHYTGTLLDGTKFDSSRDRGTPFGFTLGQGQVIKGWDQGIVTMKKGENALFTIPAELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGLFKKIVTEGEKWENPKDLDEVLVNYEARLEDGTLVAKSDGVEFTVEDGYFCPALSKAVKTMKKGEKVILSVKPQYGFGEKGKPAHGDEGAVPPNASLEITLELVSWKTVSDVTDDKKVIKKILKEGEGYERPNEGAVVKLKVIGKLQDGTLFLKKGHDDEGELFEFKTDEEQVIDGLDRAVLTMKKGEVALLTIAPEYGFGSSESQQELAVVPSNSTLYYEVELVSFEKEKESWDMNTPEKIEGAGNKKEEGNALFKAGKYAKASKRYEKAVKFIEYDTSFSVEEKKSSKTLKVACNLNNAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYIQLADLDLAEIDIKKALELDPDNREVKLEYKTLKEKMKEYNKKQAKFYGNMFNKLHKLDSLDNNKAESKDAQPMNVDSKA* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0256 574 MobiDBLite consensus disorder prediction 1 20 - -
Pvu10g0256 574 Pfam Tetratricopeptide repeat 484 517 IPR001440 GO:0005515
Pvu10g0256 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 174 263 IPR001179 GO:0003755
Pvu10g0256 574 Gene3D Tetratricopeptide repeat domain 387 544 IPR011990 GO:0005515
Pvu10g0256 574 ProSiteProfiles TPR repeat profile. 484 517 IPR019734 GO:0005515
Pvu10g0256 574 SUPERFAMILY FKBP-like 150 264 - -
Pvu10g0256 574 SMART tpr_5 401 434 IPR019734 GO:0005515
Pvu10g0256 574 SMART tpr_5 484 517 IPR019734 GO:0005515
Pvu10g0256 574 SMART tpr_5 450 483 IPR019734 GO:0005515
Pvu10g0256 574 Coils Coil 517 537 - -
Pvu10g0256 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 143 IPR001179 GO:0003755
Pvu10g0256 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 285 381 IPR001179 GO:0003755
Pvu10g0256 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 169 260 IPR001179 GO:0003755
Pvu10g0256 574 SUPERFAMILY TPR-like 394 549 IPR011990 GO:0005515
Pvu10g0256 574 Gene3D - 264 385 IPR046357 GO:0003755
Pvu10g0256 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 291 384 IPR001179 GO:0003755
Pvu10g0256 574 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 273 383 - -
Pvu10g0256 574 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 270 - -
Pvu10g0256 574 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 384 554 - -
Pvu10g0256 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 58 146 IPR001179 GO:0003755
Pvu10g0256 574 Gene3D - 30 148 IPR046357 GO:0003755
Pvu10g0256 574 PANTHER PEPTIDYLPROLYL ISOMERASE 1 270 - -
Pvu10g0256 574 PANTHER PEPTIDYLPROLYL ISOMERASE 273 383 - -
Pvu10g0256 574 PANTHER PEPTIDYLPROLYL ISOMERASE 384 554 - -
Pvu10g0256 574 SUPERFAMILY FKBP-like 32 159 - -
Pvu10g0256 574 Gene3D - 149 263 IPR046357 GO:0003755
Pvu10g0256 574 SUPERFAMILY FKBP-like 266 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0256 Pvu-Chr10 3584138 3589883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0256 1 558 Calmodulin-binding Proteins AT3G25230 80.108 0.0 892