LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g0253	ATGGAATTCGCTTCTTCATCATCCAAACTCCCAAGGAAGTACGATGTGCTCATAAACTTTAATGGAGAAGACATCCAAAGGAAATTTGTTTCTCATCTCGATTCTGCCCTCTCTGCTGTTGGCTTCACCACTTTCCTTCACCACCCCAATGCACTCAACCCAATTCACTTCCAACAACCTATTCTCAATCACTCTCGTGTAGCCATTGTTGTTTTCACCACAGCCTACTCTCAATCTGAGTGGTGTCTTCATCAGCTTCAACAAATCATCAAATGGCACCAAACTTATTGCAGACATGTTCTGCCCGTGTATTACGAAATTCAGCCATCTGATGTACGACTTCAGATGGGTGATTTTGGTAAAGCCTTCAAAGCAACTGCAGAGCAAGCATTCTCAGAACAAGAACTGGAGCATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGCTGCAAATTTATTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTCCACCAAATTTTTAAGACCGTTCTTCATTTACCAGTTTTGTCCGCTACTAAATTCCCAGTTGGATTACAATCCCGTGTGGAAGATGTGATTCGAATTATCAAAAATAAATCCACGCAAGTTTTTACGATAGCTATATGTGGAATGGGAGGATCGGGTAAAACCACCCTTGCCAAAGCCATCTACAATCAAATTCAAGGTACATTCATGGAGAAAAGTTTCTTTGAAGATATTATACAACTTAGTAGTGGAACAAGAGCATATCTTCGTTTAGAAAAACAACTTTTTTTAGATGTCCTAAAAACAAAGATGAAGACACCTAGTGGTAAGATGGGGAGAAAAATGATTCGGGAAAGACTTTCTGGGAAAAGGGTGCTCATTGTACTTGACGATGTATCTAAGTTTCATGCATCATTAGTATTGGAATGGCGTGAATGGTTCAGTGCAAAAACTGTAATAATCATTACAACAAGAGATCAAGACCTACCAAGGATTCTTCAAGTTGATTCTGTTTTTCCATTAAAGCTAATGAACGCAGACGAGTCCCTTGAGCTTCTTAGTTGGCATGCATTTGGAGAAGCAAAACCAAAAGAAGAATACAATTACCTTGCAAAAAGTGTAGTTAGTCATTGTGGAGGACTACCTCTAGCTCTTGAAGTCATTGGAAATTGTTTATTTGAAAGGACAAAAGAAGAATGGAATAGTGTTTTGTTAAAATTAGAGATAATTCCCATGCACCACATTCGACAGAAATTGAAAATAAGCTTCGATGGTTTACGCAATGAAATGGAAAAAGATTTATTCCTTGATGTATGTTGTTCCTTCGTTGGTGAGGGCAGAGCCTATGCTACCAAGATTCTAAATGGCTGTGGAGTAGATGCTGATACTGGAATAAGAGCTCTGATAGAAAGTAACCTCATAAAAGTTATAAAGAACAACAAACTTGGAATGCATTCTTTGCTACAAGAAATGGGAAGAGAAATTATTCGTGAGATTTCAAGAGAGGAATTTTGGATGGAGAGCAGACTGCAGTTTGATGATGCAGAATATGTATTGACAGATAATTCAGGCAGAAACTCTCGGGCAGTGCCTGTGAAACTGCGTTCAGCCAGAAGAGAACAATCAAGACTCCTGCTGAAACTCGCTGGAAGTTCTGAGTACACTTCTAGGAAACTGAGATGGTTCAGTTTGCAAGGGTCTTCAGAATACCCACCTAACGACTTTCATCTGCATGATGCAATAGTGATTCACTTAAAACACAATCATGTTCGACTACTTTTGAAAGAACCTCAGGTTTTGAGGTGGCTGAAAGTCCTTAATCTTAGTCACTCCAAGTATTTAACAAAAACCCCTGACTTTTCCGGACTACCAAGTCTTGAACAGCTCATTCTGAAAGATTGTCCAAGATTGCGCAAAGTACACCAATCTATTGGATGTCTGTCCAATCTTACACTGCTAAATTTGAAGGACTGTACAAGTCTGAGTAATCTCCCCGCAGAGGTATATTTGTTGAAATCTTTAAAAACTCTAATTCTCTCTGGGTGTTCGATGATTGACCTACTGGAAAAAGATACAGTGCAAATGGAATCCTTGATAACTCTAATTGCTGAACAAGTGCCCTTTTCAATTGTAAGATCAAAAAGCCTTGGATATGTATCCCTACGTGGATTTGAGAGATTGCCACCTAATCTTTTTCCTTCTATCATTCGTTCTTGGATGTCACCAACAATGAATCCCATATCTCTTAGTCATTCGTTCATGGATATGGAGGATAATTATAGTTGGGATGATATTGCGCCATTGCTTAGCAGCCTGGCAAATCTTCGAAGTGTTTTGGTGCAATGTGACACCGAAATTCAACTATCTAAGCAATTGAAAAATTTTCTGGTGGAATATTTTGCAACTACAGAATCAGGAATTTCAAAGCAGCACTTCAGGTCTTCTTTGATTGGTGTTGGAGCATACCATGAATTCTTCAATGCTGTCAGCCATAACGTATCTAAGGTATCGGAAGGCAGTGAGTCATGTGATGTTTATCTCCCAGTCGACAATGATCCTTATTGGTTGGCCCATATGGGTGAGGAACATTGTGTTTCTTTCACTGTGCCTCTAGATCGTGACTTGAAGGGAATGGTTTTGTGTGTTGTTTATTCATCAACTCCTGAAATCGATGCAACTGAATGTCTTAGAAGTGTCTTAATTGTTAACTACACAAAGTGCACATTGCATATACACATGCATGGCAGAGTAATTTCCTTTAATGATATAGATTGGCAGGGTATATTGTCAAATTTAGGATATGGAGACAAGGTGGAGATTTTTTTGAGTTTTGGTCATGGATTGGTGGTCAAGAACACAGTTGTCTATCCCATATGTGAATTCTTTCCCTAG	2892	0.3935	MEFASSSSKLPRKYDVLINFNGEDIQRKFVSHLDSALSAVGFTTFLHHPNALNPIHFQQPILNHSRVAIVVFTTAYSQSEWCLHQLQQIIKWHQTYCRHVLPVYYEIQPSDVRLQMGDFGKAFKATAEQAFSEQELEHGMSRWSHALTKAANLFGWDESNYRSDAELVHQIFKTVLHLPVLSATKFPVGLQSRVEDVIRIIKNKSTQVFTIAICGMGGSGKTTLAKAIYNQIQGTFMEKSFFEDIIQLSSGTRAYLRLEKQLFLDVLKTKMKTPSGKMGRKMIRERLSGKRVLIVLDDVSKFHASLVLEWREWFSAKTVIIITTRDQDLPRILQVDSVFPLKLMNADESLELLSWHAFGEAKPKEEYNYLAKSVVSHCGGLPLALEVIGNCLFERTKEEWNSVLLKLEIIPMHHIRQKLKISFDGLRNEMEKDLFLDVCCSFVGEGRAYATKILNGCGVDADTGIRALIESNLIKVIKNNKLGMHSLLQEMGREIIREISREEFWMESRLQFDDAEYVLTDNSGRNSRAVPVKLRSARREQSRLLLKLAGSSEYTSRKLRWFSLQGSSEYPPNDFHLHDAIVIHLKHNHVRLLLKEPQVLRWLKVLNLSHSKYLTKTPDFSGLPSLEQLILKDCPRLRKVHQSIGCLSNLTLLNLKDCTSLSNLPAEVYLLKSLKTLILSGCSMIDLLEKDTVQMESLITLIAEQVPFSIVRSKSLGYVSLRGFERLPPNLFPSIIRSWMSPTMNPISLSHSFMDMEDNYSWDDIAPLLSSLANLRSVLVQCDTEIQLSKQLKNFLVEYFATTESGISKQHFRSSLIGVGAYHEFFNAVSHNVSKVSEGSESCDVYLPVDNDPYWLAHMGEEHCVSFTVPLDRDLKGMVLCVVYSSTPEIDATECLRSVLIVNYTKCTLHIHMHGRVISFNDIDWQGILSNLGYGDKVEIFLSFGHGLVVKNTVVYPICEFFP*	964

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g0253	963	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	156	IPR035897	-
	Pvu10g0253	963	SUPERFAMILY	"Winged helix" DNA-binding domain	415	505	IPR036390	-
	Pvu10g0253	963	SMART	AAA_5	207	345	IPR003593	-
	Pvu10g0253	963	SMART	till_3	13	153	IPR000157	GO:0007165
	Pvu10g0253	963	Gene3D	Ribonuclease Inhibitor	545	705	IPR032675	-
	Pvu10g0253	963	Gene3D	-	344	427	IPR042197	-
	Pvu10g0253	963	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	955	IPR044974	GO:0006952
	Pvu10g0253	963	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	169	437	IPR027417	-
	Pvu10g0253	963	SUPERFAMILY	L domain-like	503	775	-	-
	Pvu10g0253	963	Gene3D	-	175	337	IPR027417	-
	Pvu10g0253	963	ProSiteProfiles	TIR domain profile.	12	179	IPR000157	GO:0007165
	Pvu10g0253	963	Pfam	TIR domain	13	175	IPR000157	GO:0007165
	Pvu10g0253	963	Gene3D	-	7	174	IPR035897	-
	Pvu10g0253	963	Pfam	NB-ARC domain	193	421	IPR002182	GO:0043531
	Pvu10g0253	963	PRINTS	Disease resistance protein signature	210	225	-	-
	Pvu10g0253	963	PRINTS	Disease resistance protein signature	286	300	-	-
	Pvu10g0253	963	PRINTS	Disease resistance protein signature	378	392	-	-
	Pvu10g0253	963	PRINTS	Disease resistance protein signature	669	685	-	-
	Pvu10g0253	963	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	17	955	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g0253	Pvu-Chr10	3553137	3556750	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g0253	559	751	WRKY Transcription Factor Family	AT5G45050	28.440	1.86e-06	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g0253	-		-	vun:114165123	1234.55