Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0252 ATGGAGAAGAAATCCAAAGGAAATTTGTGTCTCATCTCGATTCTGCCCTCTCTGCTGTTGGCTTCACCACTTTCCTTCACCACCCCCAATGAAGACAACCCAATTCCCTTCCAACAACCTATTCTCAATCTCTGTCGTGTAGCAATTGTTGTTTTCACCAAATTCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATCAAATGGCATGAAACTTATTGCAGACATGTTCTGCCCGTGTATTACGAAATTCAGCCATCTGATGTACGTCTTCAGAAGGGTGATTTTGGAAAAGCCTTCAAAGCAACTGCACACCAAACATTCTCAGGACAAGAACTGGAGCATGGCATGTCCCGGTGGAGCCACGCACTCATCAAAGCTGCAAATTTATTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTCCACAAAATTGTTAAGACCGTTCTTCATTTACCAGTCTTGTCTGCCACTCAATTTCCAGTTGGATTAGAATCCCGTGTAAAAGATGTCATTCGAATTATCAAAAATAGATCCACGCAAGTTTTTACGATAGCGATATGTGGAAAGGGAGGATCGGGTAAAACCACCCTTGCCAAAGCCATCTACAATCAAATTCAAGGTACATTCATGGAGAAAAGTTTCATTGAAGATATTACACAACTAGGTAGTGGAACAAGTGCATATCTTCGTTTAGAAAAACAACTTCTTTTAGATGTCCTAAAAACAAAGATGAAGACTCCTAGCGATAAGATTCGGGAAAGACTTTATGGGAAAAGGGTTCTCATTGTACTTGACGATGTATCTAAGTTTCATGCATCATTAGTATTGAAATGGCGAGTATGGTTCAGTGGAGAAACTGTAATAATTATTACAACAAGAGATCAAGACCTACAAAGGATTCTTCAATTTGATTTTGTTTCTCAGTTAAACCCAATGAACGCAGACGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTGGAGAAGCTAAACCAAAAGAAGAATACAAGTATCTAGCAGAAAGTGTTGTTAGTCATTGTGGAGGACTACCTCTAACTCTTGAAGTCATTGGAAGTTGTTTATTTGAAAGGACAAAAGAAGAATGGAATAGTGTTTTGTTAAAATTAGAGAAAATTCCCCTGCACAACATTCAACGGAAATTGAAAATAAGCTTCTATGGTTTACGCAATGAAATGGAAAAAGATTTATTCCTTGATATATGTTGTTCCTTCCTTGGTGAGGGCAGAGCATATGTTACCAAGATTCTAAATGGCTGTGGAGTAGATGCTGATACTGGAATAAGAGTTCTGATAGAAAGTAGCCTCATAAATATTAAAAAGAACGACAAACTTGGAATGCATCCTATGCTACAAAAAATGGGAAGAGAAATTATTCGGATGAAGAGGAGAAGACTGCAGTTTGATGAGGCAGAATATGTATTGACAGATAATTCAGGGAGAAACTCTCGGGCAGTGCCTGTGAAACTGCGTTCAGCCAGAAGAGAACCATCAAGACTCGATGGATATTCTCCGTACACTTCTAAGAAACTGAGATGGATCAGTTTGAAACGGTCTTATACACCATATTCACCTGACTCCTTGCATCTGCATGATGCAATAGCGATTCACATAAAAGACAACCATCTTCGACTCCTCTTGAAAGAACCTCAGGTTTTCAGGTGGCTCAAAGTCCTTAATCTTAGTCACTCAGAATATTTAATAGAAACCCCTGACTTTTCCCGACTATCTAGTCTTGAACAGCTCATTCTCAAAGATTGTCCAGGATTACGCAAAGTACACCAATCTATTGGAGGTCTCTCCAATCTTACACCGCAGAGGATAATAGTTGGGATGATATTACGCCATTGTTTAGCAGCCTGGCAAATCTTCGAAGTGTTTTGGTGCAATGTGACACAGAGTTTCAACTATCTAAGCACTTGA 1959 0.3951 MEKKSKGNLCLISILPSLLLASPLSFTTPNEDNPIPFQQPILNLCRVAIVVFTKFYSQSAWCLHQLQQIIKWHETYCRHVLPVYYEIQPSDVRLQKGDFGKAFKATAHQTFSGQELEHGMSRWSHALIKAANLFGWDESNYRSDAELVHKIVKTVLHLPVLSATQFPVGLESRVKDVIRIIKNRSTQVFTIAICGKGGSGKTTLAKAIYNQIQGTFMEKSFIEDITQLGSGTSAYLRLEKQLLLDVLKTKMKTPSDKIRERLYGKRVLIVLDDVSKFHASLVLKWRVWFSGETVIIITTRDQDLQRILQFDFVSQLNPMNADESLELLSWHAFGEAKPKEEYKYLAESVVSHCGGLPLTLEVIGSCLFERTKEEWNSVLLKLEKIPLHNIQRKLKISFYGLRNEMEKDLFLDICCSFLGEGRAYVTKILNGCGVDADTGIRVLIESSLINIKKNDKLGMHPMLQKMGREIIRMKRRRLQFDEAEYVLTDNSGRNSRAVPVKLRSARREPSRLDGYSPYTSKKLRWISLKRSYTPYSPDSLHLHDAIAIHIKDNHLRLLLKEPQVFRWLKVLNLSHSEYLIETPDFSRLSSLEQLILKDCPGLRKVHQSIGGLSNLTPQRIIVGMILRHCLAAWQIFEVFWCNVTQSFNYLST* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0252 652 Pfam TIR domain 43 155 IPR000157 GO:0007165
Pvu10g0252 652 Gene3D Ribonuclease Inhibitor 510 642 IPR032675 -
Pvu10g0252 652 SMART AAA_5 187 320 IPR003593 -
Pvu10g0252 652 Gene3D - 38 153 IPR035897 -
Pvu10g0252 652 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 40 616 - -
Pvu10g0252 652 Gene3D - 154 311 IPR027417 -
Pvu10g0252 652 SUPERFAMILY Toll/Interleukin receptor TIR domain 42 136 IPR035897 -
Pvu10g0252 652 Pfam NB-ARC domain 174 388 IPR002182 GO:0043531
Pvu10g0252 652 ProSiteProfiles TIR domain profile. 1 159 IPR000157 GO:0007165
Pvu10g0252 652 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40 616 IPR044974 GO:0006952
Pvu10g0252 652 Gene3D - 319 402 IPR042197 -
Pvu10g0252 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 413 IPR027417 -
Pvu10g0252 652 SUPERFAMILY L domain-like 500 616 - -
Pvu10g0252 652 PRINTS Disease resistance protein signature 190 205 - -
Pvu10g0252 652 PRINTS Disease resistance protein signature 261 275 - -
Pvu10g0252 652 PRINTS Disease resistance protein signature 353 367 - -
Pvu10g0252 652 PRINTS Disease resistance protein signature 586 602 - -
Pvu10g0252 652 SUPERFAMILY "Winged helix" DNA-binding domain 390 476 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0252 Pvu-Chr10 3537155 3540753 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0252 168 603 WRKY Transcription Factor Family AT5G45050 27.992 8.28e-45 170