Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0250 ATGGAACCTAAGGGGGGTGGCGAACTCAAGGTACCGTTGTTGCAGGCTCCGGAGGCCTCCGCCGCCGCAGTTAGCACAGTCACGTTTCAACTGAGCGACATCAAGTGTGCTTCGTGCGTAAATTCCGTCGAGGCCGTCGTCGGGAGTCTTAACGGCGTCAAAAGCGTCGCCGTTTCGCCGCTTGATGGCCGCGCCGCAATCAAGTTTGACCCCAAGTTGGTTACTGTGAAACAATTAAAAGAAGGCATAGAGGATAGTGGGTTTGGAGTTCATGAGCTTCATGAGCAGGACATAGCAGTGTGCCGGGTGAGGATTAAAGGAATGGCATGCACAAGCTGCTCTGAGTCCGTTGAGAATGCCCTTCAAATGGTTGAAGGGGTGAGAAAGGCAATAGTTGGTCTTGCTTTGGAGGAGGCAAAAGTACACTTTGATCCTAATCTTACTGATGTTGACAAGATAATTGAGGCCATAGAGGATACCGGTTTTGGAACTGATCTTATTAGCTCTGGGAATGATGCAAACAAAGTGTTTCTAAAGCTTGAAGGTGTTTATACCGCAGAAGATGTTAATTTAGTAATGTCTTCTCTTGAGTTAGCTGTGGGGGTGAACCATGTTGAGATGGATTTGTCAGAACATAAAGTTACAGTTAGCTATGATCCGGATGTCACAGGTCCAAGATCTCTCATTCACTGTGTTCAGGAAGCTAGCTGTGGCCCCAAGAAGTATGAAGCAACCTTATACTCTCCTTCGAGGGAAAGAGGAAGAGATAAGGTGAATGAAATCCGTATGTATAGGGACCAATTTTTGTTCAGCTGCTTATTTTCTGTGCCGGTGTTTGTATTTGCCATGGTGCTTCCCATGCTTCCTCCTTATGGCAACTGGTTAAACTACAGGATCCACAACATGCTTACTCTTGGGCTGTTTTTAAGATGGATTCTTTGCACGCCTGTCCAGTTCATAATTGGCAAAAGGTTCTATGTTGGATCATATCACGCACTGAAGCGAAAATCTGCTAACATGGATGTGCTTGTTGCGCTTGGCACAAATGCTGCTTATTTTTATTCTCTATATATATTAGTAAAAGCACTGACTCCGGATACATTTGAAGGACAAGATTTCTTTGAAACAAGTTCTATGTTGATATCCTTTATTCTATTAGGGAAGTATTTGGAAATTGTGGCTAAAGGGAAAACATCGGATGCTTTAGGAAAGCTGACTCAACTTGTTCCTGATAAAGCTTATTTAGTAGCCATTGATACTGATGGAAATATAATCTCTGAGACAGAAATTGACACTCAACTTATACAAAAAAATGACATAATTAAGATTGTTCCTGGGACCAAAATTCCTGTTGATGGTATTGTTATAAAAGGACAAAGCTACGCAAATGAAAGTATGATCACTGGGGAGGCAAGACCTGTCGATAAAAGCCCAGGAGACAAGGTCATCAGTGGAACCATCAATGAAAATGGATGCTTACTGGTTAAGGCCACACATGTTGGATCAGACACTGCACTTTCTCAAATAGTTCAACTCGTTGAAGCTGCTCAACTTGCCAAAGCACCAGTTCAAAAACTTGCTGACCATATTTCAAGGGTTTTTGTTCCAATAGTGGTTGCTGTGGCACTAATAACTTGGCTTGGATGGTTCATTCCTGGCAAAGCTGGTATTTTCCCTAAAGATTGGATACCAAAAGCAATGGATGCATTTGAGCTTGCTTTGCAGTTTGCTATTTCTGTGTTGGTTGTTGCTTGCCCGTGTGCTTTGGGACTTGCAACACCAACAGCAGTCATGGTTGCTTCAGGCATGGGTGCTTCTCAAGGTGTGCTCATCAAGGGTGGAAATGCACTGGAAAAGGCACACAAGGTAACAGTTGTTGTGTTTGATAAGACTGGCACACTAACAGTTGGGAAGCCAGAGGTAGTTGGTGCAGTTTTGTTTTCTGAATTTTCCATGGAGGAGTTATGTGACATGACAATTGCTGTGGAGGCAAGCAGTGAGCACCCGATAGCAAAAGCTGTTGTGGTACATGCAAAGAGACTGCGCAAGAAGTTTGGTTCTTCCACAGAGGAAGTCCTGGATGTGGATGATTTTGAGGTACACATGGGAGCTGGTGTAAGGGGAAAAGTTGGTAATAGAACGGTTGTAGTTGGAAACAAGAGACTCATGCATGCTTGTAATATTCCAATAAGTTCTGAGGTTGAGAAGTACATCTCTGAAAATGAAAATCTGGCTAGAACTTGCATTTTAGTTTCAATTGATGGAAAGATTGCTGGTGCATTCTGTGTAACTGATCCTGTAAAGCCAGAGGCTAGACGTGTTGTATCTTTTCTACACTCCATGGGCATCTCAAGCATCATAGTGACTGGTGATAACCGTGCTACCGCAACTGCTATAGCAAATGAAGTAGGTATTGATGAGGTTTTTGCTGAGACAGATCCTGTTGGCAAAGCTAACAAGGTGAAAGACTTGCAGATGAAAGGAATGACTGTGGCAATGGTAGGTGATGGAATAAATGACTCACCAGCCCTGGTTGCTGCTGATGTTGGGATGGCAATTGGTGCTGGAACTGACATAGCTATAGAAGCAGCTGATATAGTTCTGGTCAAAAGCAGTTTGGAAGATGTGATCACAGCCATTGATCTTTCCAGAAAGACCATGTCGCGCATCCGTCTGAACTACATCTGGGCTCTTGGTTACAACATTCTAGGCATGCCAGTTGCTGCTGGAGTCTTGTACCCTTTTACAGGAATCAGATTACCCCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCTTCTCTTAGTGTGGTTTCATCCTCTCTTTTGCTGCAGTTCTATAAAAAACCTCTGCATATACAATCCTCTTCATGA 2871 0.4364 MEPKGGGELKVPLLQAPEASAAAVSTVTFQLSDIKCASCVNSVEAVVGSLNGVKSVAVSPLDGRAAIKFDPKLVTVKQLKEGIEDSGFGVHELHEQDIAVCRVRIKGMACTSCSESVENALQMVEGVRKAIVGLALEEAKVHFDPNLTDVDKIIEAIEDTGFGTDLISSGNDANKVFLKLEGVYTAEDVNLVMSSLELAVGVNHVEMDLSEHKVTVSYDPDVTGPRSLIHCVQEASCGPKKYEATLYSPSRERGRDKVNEIRMYRDQFLFSCLFSVPVFVFAMVLPMLPPYGNWLNYRIHNMLTLGLFLRWILCTPVQFIIGKRFYVGSYHALKRKSANMDVLVALGTNAAYFYSLYILVKALTPDTFEGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVAIDTDGNIISETEIDTQLIQKNDIIKIVPGTKIPVDGIVIKGQSYANESMITGEARPVDKSPGDKVISGTINENGCLLVKATHVGSDTALSQIVQLVEAAQLAKAPVQKLADHISRVFVPIVVAVALITWLGWFIPGKAGIFPKDWIPKAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGNALEKAHKVTVVVFDKTGTLTVGKPEVVGAVLFSEFSMEELCDMTIAVEASSEHPIAKAVVVHAKRLRKKFGSSTEEVLDVDDFEVHMGAGVRGKVGNRTVVVGNKRLMHACNIPISSEVEKYISENENLARTCILVSIDGKIAGAFCVTDPVKPEARRVVSFLHSMGISSIIVTGDNRATATAIANEVGIDEVFAETDPVGKANKVKDLQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPVAAGVLYPFTGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPLHIQSSS* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0250 956 SUPERFAMILY HAD-like 625 940 IPR036412 -
Pvu10g0250 956 PRINTS P-type cation-transporting ATPase superfamily signature 463 477 - -
Pvu10g0250 956 PRINTS P-type cation-transporting ATPase superfamily signature 627 641 - -
Pvu10g0250 956 PRINTS P-type cation-transporting ATPase superfamily signature 759 770 - -
Pvu10g0250 956 PRINTS P-type cation-transporting ATPase superfamily signature 781 791 - -
Pvu10g0250 956 PRINTS P-type cation-transporting ATPase superfamily signature 834 853 - -
Pvu10g0250 956 PRINTS P-type cation-transporting ATPase superfamily signature 857 869 - -
Pvu10g0250 956 Gene3D - 20 91 - -
Pvu10g0250 956 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 380 911 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu10g0250 956 PANTHER ATP7, ISOFORM B 14 952 - -
Pvu10g0250 956 Gene3D - 100 170 - -
Pvu10g0250 956 ProSitePatterns Heavy-metal-associated domain. 31 59 IPR017969 GO:0046872
Pvu10g0250 956 CDD HMA 103 163 IPR006121 GO:0046872
Pvu10g0250 956 Pfam haloacid dehalogenase-like hydrolase 624 848 - -
Pvu10g0250 956 ProSiteProfiles Heavy-metal-associated domain profile. 26 92 IPR006121 GO:0046872
Pvu10g0250 956 SUPERFAMILY HMA, heavy metal-associated domain 24 95 IPR036163 GO:0046872
Pvu10g0250 956 Pfam Heavy-metal-associated domain 28 88 IPR006121 GO:0046872
Pvu10g0250 956 Pfam Heavy-metal-associated domain 102 162 IPR006121 GO:0046872
Pvu10g0250 956 SUPERFAMILY Calcium ATPase, transduction domain A 427 513 IPR008250 -
Pvu10g0250 956 SFLD Haloacid Dehalogenase 609 886 - -
Pvu10g0250 956 CDD P-type_ATPase_Cu-like 268 930 - -
Pvu10g0250 956 PRINTS H+-transporting ATPase (proton pump) signature 834 850 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu10g0250 956 PRINTS H+-transporting ATPase (proton pump) signature 865 890 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Pvu10g0250 956 Pfam E1-E2 ATPase 420 605 - -
Pvu10g0250 956 SUPERFAMILY HMA, heavy metal-associated domain 96 169 IPR036163 GO:0046872
Pvu10g0250 956 ProSitePatterns Heavy-metal-associated domain. 105 134 IPR017969 GO:0046872
Pvu10g0250 956 SUPERFAMILY Calcium ATPase, transmembrane domain M 371 619 IPR023298 -
Pvu10g0250 956 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 14 952 - -
Pvu10g0250 956 SFLD p-type atpase 609 886 IPR044492 -
Pvu10g0250 956 CDD HMA 28 91 IPR006121 GO:0046872
Pvu10g0250 956 Gene3D - 638 767 IPR023299 GO:0000166
Pvu10g0250 956 Gene3D - 172 248 - -
Pvu10g0250 956 SUPERFAMILY HMA, heavy metal-associated domain 170 239 IPR036163 GO:0046872
Pvu10g0250 956 TIGRFAM TIGR00003: copper ion binding protein 27 90 IPR006122 GO:0005507
Pvu10g0250 956 TIGRFAM TIGR00003: copper ion binding protein 103 162 IPR006122 GO:0005507
Pvu10g0250 956 ProSiteProfiles Heavy-metal-associated domain profile. 100 166 IPR006121 GO:0046872
Pvu10g0250 956 ProSitePatterns E1-E2 ATPases phosphorylation site. 629 635 IPR018303 -
Pvu10g0250 956 Gene3D - 618 884 IPR023214 -
Pvu10g0250 956 ProSiteProfiles Heavy-metal-associated domain profile. 175 241 IPR006121 GO:0046872
Pvu10g0250 956 Gene3D - 395 517 - -
Pvu10g0250 956 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 340 943 IPR027256 GO:0006812|GO:0016021|GO:0019829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0250 Pvu-Chr10 3512060 3520083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0250 24 949 Primary Pumps ATPases AT1G63440 56.438 0.0 1050
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0250 K17686 - gmx:100793894 1686.77