LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g0245	ATGGAATTCGCCTCTTCAACATCAAAACTCCCAAAGAAGTACGATGTGGTCATAAACTTCAATGGAGAAGACATCCAAAGGAAATTTGTGTCTCATCTCGATTCTGCCCTCTCTGCTGTTGGCTTCACCACTTTCCTTCACCACCCCAATGCACACAACCCACTTCACTTCCAACAACCTATTCTCAATCACTCTCGTGTAGCCATTGTTGTTTTCACAACAGCCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATCAAATGGCACCAAACTTATTGCAGACATGTTCTGCCCGTGTATTACGAAATTCAGCCATCTGATGTACGACTTCAGATGGGTGATTTTGGTAAAGCCTTCAAAGCAACTGCAGAGCAAGCATTCTCAGAACAAGAACTGGAGCATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGCTGCAAATTTATTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAATTAGTCGACAAAATTGTTAAGACCGTTCTTCATTTACCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCCGTGTGGAAGATGTGATTCGAACTATAAAAGATAAATCCACGGAAGTTTATACGATAGGGATAAGTGGAGCGGGAGGATCTGGTAAAACCACCCTGGCCAAAGCAATCTACAATCAACTTAGTGCTAAATTCATAGAGGGAAGTTTCATTGAAGATATTGGGCAAGTTAGTGGAACAAGAGCGGATCTTCGTTTAGAGAAACAACTTCTTTTAGATGTCCTAAAAACAAAGGTGGAGATACCTAGCGGTGAGATGGGGAGAAGAATGATTCAGGAAAGACTTTCTGGGAAAAGGGTGCTCATTGTGCTTGACGATATGCCTGAGTCTGGTGCATCATTAGTATGGAAATGGCGTGAATGGTTCAGTGGAGGAACTGTAATAATCATTACAACAAGAGATGTAGACCTACTAAGGATTCTTCGAGTTGATTCTTTTTTTCCGTTAAAGCCAATGAACGCAAACGAGTCCCTTGAGCTTCTTAGTTGGCATGCATTTGGAGAAGCAAAACCAAAAGAAGAATACAATTACCTTGCAAAAAGTGTAGTTAGTCATTGTGGAGGACTACCTCTAGCTCTTGAAGTCATTGGAAGTTGTTTATTTGAAAGGACAAAAGAAGAATGGAATAGTGTTCTGTTAAAATTGGAGAAAATTCCCCTGCACCACATTCAACGGAAATTGAAAATAAGCTTAGATGGTTTACGCAATGAAATGGAAAAAGATTTATTCCTTGATGTATGTTGTTCCTTCTTTGGTAAGGGCAGAGCCTATGTTACCAAGATCCTAAATGGCTGTGGAGTAGATGCTGATACTGGAATAAGAGTTCTGATAGAACGTAGCCTCATAAAAGTTAAAAAGAACAACAAACTTGGAATGCATCCTTTGTTACAAGAAATGGGAAGAGAAATTATTCGTGAAATTTCAGAAGAGGAATTTTGGATGGAGAGGAAACTGCAGTTTGATGATGCAGAATATGTGTTGACAGATAATTCAGGGACAAACTCTCGAGCAGTGCCTGTGAAACTGCGTTCAGCCAGAAGAGAACCATCAAGACTGCTGAAACTGGCTGGAGATTCCAAATACCTTTTTGGGAAACTGAGATGGACCAGTTTGCAACGGTTTTCTGCAAAATACCTATCTAACCACTTTCTGCATTATGCAATAGCGATTGAATTAAAACACAGTCTTCTTCAATTCGTCTGGAAAGAACCACAGGTTTTGAGGTGGCTAAAAGTCCTTAATCTTAGTCACTCCAAGTATTTAACAGAAACGCCTGACTTTTCCGGACTACCAAGTCTTGAACAGCTGATTCTCAAAGATTGTCCAGGATTGCGCGAGGTACACCAATCTATTGGAGGTCTCTGCAATCTTACACTGCTAAATTTGAAGGACTGTACAAGTCTGAGTATTCTCCCCAGAGAGATATATATGTTGAAATCTTTAAAAACTCTCATTTTCTCTGGGTGTTTGATGATTGACAGATTAGAAAAAGATACAGTTCAAATGGAATCCTTGATAACTCTAATTGCTGAAAATACAGCTGTTAAACAAGTGCCCTTTTCAATTGTAAGATCAAAAAGTATTGGATATATATCCCTATGTGGATTTGAGAGATTGCCACGTAATCTTTTTCCTTCTATCATTCGGTATTGGATGTCACCACCAATGAATTCCATGTCTTTTATTCATTCGTTTTACATGGATATGGAGGATAATAGCTGGGATGATATTACGCCATCGCTTAGCAGCCTGACAAAACTTCGAAGTATTTTGGTGCAATGTGACACGGAGTTTCAACTATCTAAGCAAGTGCAAAATATTCTGGTCGAATATTTTGCAACTATTACCGAATCAAGCATTTCAAAGCAGCACTTCAGGTCTTCTTTTATTGGTGTTGGTGCATACCATGAATTCTTCAATTCTGTCAGCGATTACATATCTGAGGTATCGACAAGCAGTGAGTCATGTGATGTTTCTCTCCCAGGTGACAATGATCCTTATTGGTTGGCCCATATGGGTGAGGAACACTCTGTTTCTTTCACTGTGCCTCTAGATCGTGACTTTAAGGGAATGGTTTTGTGTGTTGTTTATTCATCAACCCCTGAAATCGATGCAACTGAATGTCTTAGAAGTGTCTTAATTGTTAATTACACACAGTGCACATTGCATATACACAAGCATGGCACAGTAATTTCCTTTAATTATATAGATTGGCAGGGTATAATGTCAAATTTAGGATCTGGAGACAAGGTGGAGATTTTTTTGAGTTTTGGTCATGGATTGGTTGTCAAGAAAACCGTTGTCTATCCCATATGTGGTGAATCACATTAA	2904	0.396	MEFASSTSKLPKKYDVVINFNGEDIQRKFVSHLDSALSAVGFTTFLHHPNAHNPLHFQQPILNHSRVAIVVFTTAYSQSAWCLHQLQQIIKWHQTYCRHVLPVYYEIQPSDVRLQMGDFGKAFKATAEQAFSEQELEHGMSRWSHALTKAANLFGWDESNYRSDAELVDKIVKTVLHLPVLSATKFPVGLQSRVEDVIRTIKDKSTEVYTIGISGAGGSGKTTLAKAIYNQLSAKFIEGSFIEDIGQVSGTRADLRLEKQLLLDVLKTKVEIPSGEMGRRMIQERLSGKRVLIVLDDMPESGASLVWKWREWFSGGTVIIITTRDVDLLRILRVDSFFPLKPMNANESLELLSWHAFGEAKPKEEYNYLAKSVVSHCGGLPLALEVIGSCLFERTKEEWNSVLLKLEKIPLHHIQRKLKISLDGLRNEMEKDLFLDVCCSFFGKGRAYVTKILNGCGVDADTGIRVLIERSLIKVKKNNKLGMHPLLQEMGREIIREISEEEFWMERKLQFDDAEYVLTDNSGTNSRAVPVKLRSARREPSRLLKLAGDSKYLFGKLRWTSLQRFSAKYLSNHFLHYAIAIELKHSLLQFVWKEPQVLRWLKVLNLSHSKYLTETPDFSGLPSLEQLILKDCPGLREVHQSIGGLCNLTLLNLKDCTSLSILPREIYMLKSLKTLIFSGCLMIDRLEKDTVQMESLITLIAENTAVKQVPFSIVRSKSIGYISLCGFERLPRNLFPSIIRYWMSPPMNSMSFIHSFYMDMEDNSWDDITPSLSSLTKLRSILVQCDTEFQLSKQVQNILVEYFATITESSISKQHFRSSFIGVGAYHEFFNSVSDYISEVSTSSESCDVSLPGDNDPYWLAHMGEEHSVSFTVPLDRDFKGMVLCVVYSSTPEIDATECLRSVLIVNYTQCTLHIHKHGTVISFNYIDWQGIMSNLGSGDKVEIFLSFGHGLVVKKTVVYPICGESH*	968

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g0245	967	Gene3D	Ribonuclease Inhibitor	548	819	IPR032675	-
	Pvu10g0245	967	ProSiteProfiles	TIR domain profile.	12	179	IPR000157	GO:0007165
	Pvu10g0245	967	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	17	959	-	-
	Pvu10g0245	967	SUPERFAMILY	"Winged helix" DNA-binding domain	414	506	IPR036390	-
	Pvu10g0245	967	SUPERFAMILY	L domain-like	507	780	-	-
	Pvu10g0245	967	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	156	IPR035897	-
	Pvu10g0245	967	Pfam	NB-ARC domain	192	425	IPR002182	GO:0043531
	Pvu10g0245	967	Pfam	TIR domain	13	180	IPR000157	GO:0007165
	Pvu10g0245	967	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	959	IPR044974	GO:0006952
	Pvu10g0245	967	Gene3D	-	343	433	IPR042197	-
	Pvu10g0245	967	Gene3D	-	7	174	IPR035897	-
	Pvu10g0245	967	SMART	till_3	13	153	IPR000157	GO:0007165
	Pvu10g0245	967	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	171	436	IPR027417	-
	Pvu10g0245	967	SMART	AAA_5	207	342	IPR003593	-
	Pvu10g0245	967	Gene3D	-	175	335	IPR027417	-
	Pvu10g0245	967	PRINTS	Disease resistance protein signature	210	225	-	-
	Pvu10g0245	967	PRINTS	Disease resistance protein signature	285	299	-	-
	Pvu10g0245	967	PRINTS	Disease resistance protein signature	377	391	-	-
	Pvu10g0245	967	PRINTS	Disease resistance protein signature	596	612	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g0245	Pvu-Chr10	3455027	3458764	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g0245	12	782	WRKY Transcription Factor Family	AT4G12020	25.542	8.92e-53	200

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g0245	-		-	vun:114165123	1283.09