Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0207 ATGGAAGGTCGCCGGAGAATAACGCTTTACGATCAAATGACAGCTGGCAACGGCAACAACCGCAACAGCAGCAGCAGCAGAGACTCGCTAGCGAGCCTCATGCTCGACGACGTCGTGTTCAATAAGACCGAAGCCGAAGCCGAAGCCGAAGCGAGCCGAAGCCGGACTCTCCAAGACATCATTCGCGAAGAGAAACCTAACGGAGACGCGAAGGATCGGAACTCTTGGAAAGCCTTTAAGGAGAAGCTTCGGCTCAAGCGCGCTGTCGGCTTGGCTTGGTCCTCCGCCACTAGTCACAGCAATAACAACGACAATGATGATGGAAACTTACCTCAAACTCGCCTCCACTCGGACGGCGCGGCGACTCAGCAGAACGACGTGGTTGTGGAGGACGCAAACGATTCAGATCCGATTGAACGGTTCGGATCTCCGGCGGAGAACACGGCGGCCGGTGGCGATTCCTCCGAGGGGGAGAACAACCAGGAGGCGGCGGTTGGCGTGTCGTTGATGGATTTGCTGGAGGAAGCGGAGCAGGAACTGGATTTGTACAGAGTGAGCGATGATGATGCGGTGGCAGATTTTGAGAAGAGAGAAGAAGATGAAGAAGAAAAAGAGGGTTTGGTAGAGTACAACTGCAACTGCTGCGTCTGCATGGTGCGCCATAAAGGCGCGGCGTTTATCCCCTGCGGACACACCTTCTGCAGAATGTGCTCAAGGGAGATTTGGGCCAGCAGAGGGAATTGCCCTCTCTGCAATAATTTAATTTTGGAAATTCTTGATATTTTCTGA 789 0.5374 MEGRRRITLYDQMTAGNGNNRNSSSSRDSLASLMLDDVVFNKTEAEAEAEASRSRTLQDIIREEKPNGDAKDRNSWKAFKEKLRLKRAVGLAWSSATSHSNNNDNDDGNLPQTRLHSDGAATQQNDVVVEDANDSDPIERFGSPAENTAAGGDSSEGENNQEAAVGVSLMDLLEEAEQELDLYRVSDDDAVADFEKREEDEEEKEGLVEYNCNCCVCMVRHKGAAFIPCGHTFCRMCSREIWASRGNCPLCNNLILEILDIF* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0207 262 ProSiteProfiles Zinc finger RING-type profile. 214 252 IPR001841 -
Pvu10g0207 262 PANTHER OS01G0917900 PROTEIN 21 99 - -
Pvu10g0207 262 PANTHER OS01G0917900 PROTEIN 100 262 - -
Pvu10g0207 262 SMART ring_2 214 251 IPR001841 -
Pvu10g0207 262 MobiDBLite consensus disorder prediction 94 159 - -
Pvu10g0207 262 Pfam Zinc finger, C3HC4 type (RING finger) 212 255 - -
Pvu10g0207 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 259 IPR013083 -
Pvu10g0207 262 PANTHER OS01G0917900 PROTEIN 21 99 - -
Pvu10g0207 262 PANTHER OS01G0917900 PROTEIN 100 262 - -
Pvu10g0207 262 MobiDBLite consensus disorder prediction 12 29 - -
Pvu10g0207 262 CDD RING-HC 214 251 - -
Pvu10g0207 262 MobiDBLite consensus disorder prediction 45 75 - -
Pvu10g0207 262 SUPERFAMILY RING/U-box 213 258 - -
Pvu10g0207 262 MobiDBLite consensus disorder prediction 94 130 - -
Pvu10g0207 262 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0207 Pvu-Chr10 3039068 3040025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0207 4 262 C3H Transcription Factor Family AT3G25030 37.828 1.83e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0207 - - gmx:100819018 348.977