LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu10g0192	ATGACGTCATCAATTTCTTCCATGGAATTGGAGTCTTCATCGTCCAAACTCCCGCAGATGTACGATGTGCTTATCAACTTTAATGGCGAAGACATCCAAAAGAAATTTGTTTCTCATCTCGATTCTGCCCTCTCTGCTGTTGGCTTCACCACTTTCCTTCACCACCCCAATGCACACAACCCACTTCACATCCAACAACCTGTTCTCAATCTCTCTCGTATAGCAATTGTTGTTTTCACCAAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATCAAATGGCACCAAACTTATTGCCGGCATCTTCTGCCTGTTTATTACGAAATTCAGCCATCTGATGTACGTCTTCAGATGGGTGATTTTGGAAAAGCCTTCAAAGCAACTGCAGAGCAAGCATTCTCAGGACAACAACTGGAGAATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGCTGCAAATTTATTTGGATGGGATGAGAGCAATCGCAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGACCGTTCTTCATCTACCAGTATTGTCTGCTACTAAATTTCCAGTTGGATTACACTCGCACATGGAGGATCTAATTCGAACTATCAAATATAAATCCACGGAAGTTTGTAGCATAGCCATATATGGACAAGAAGGATCTGGTAAAACCACCCTTGCGAAAGCCATCTACCATCAAATTCACGATCCATTCACGGAGAAAAGTTTCATTGAAGATATTGGACAAGTTAGCGAAAGAAGAGGGAATCTTCGTTTACTGGAACAACTCCTTTCAGATGTCCTAAAATCAAAGGTAGAGATAGATAGCTTTGAGATGGGAAGAAGTATGATTCGGGAAAAACTTTCTGGGAAAAGGGTACTCATTGTACTTGACGATGCGCCTGAGTTTAATAGAGAATTACTATGGGAATGGCGTCATTGGTTCGGAGGAGGAAGTGTAATAATCATTACAACAATACCTGAAAACCTACCGAGGATACAGCAAGCTGATTTTGTTTTTCAGGTAAAGTTAATGAACGCAAACGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAACAAAAATACCATTTCCTTGCAGAAAAAGTAGTTTCGTATTGTGGAGGACTACCCCTAACTCTTGAAGTCATTGGAAGTTATTTATATGAAAGGACCAAAGAAGAATGGAATTCAGTATTGTTACTATTAGCCAATATTCCCCACCACGATGTTCAAGGGAAATTGAAAATAAGTTTCGACGGTTTACGCAATCAAATGGAAAGAGATTTATTTCTTGATGTATGTTGTTCCTTTGTTGGTAAGAGCAGAACCTATGTTACGAAGATCCTAAATGGCTGTGGAATAGACGCAGATAGTGGAATAAGAGTTCTCATAAAGCATAGTCTCATACAAATTAATAAGAACAACAAATTAATAATGCATTCATTGCTACGACAAATGGGAAGAAAAATTATTCGTGAAATTTCAGGAAAGGAGCCTGAGAACAGTAAATTGTGGTTTGATAAGGATGCAAGATATTCACTGTCTGAGAATACGCTCTTTTCATTTAAGTGCACAAAAGTCATTCAGACATTGCCTACCAGAAGAGATTTCTTCGGACGCTATCCTTTACAGGTAAGAGACCGATCAAGACTGCTGAAATTCGCTGGAGATTCTGAGTACCTTTTTAGGAATCTGAGATGGATCAGTTTGCGAGGGTTTTCTTCAGAATACCTACCTAACCACTTTTATCAGCATTATCCAATAGCCATTGAAATAAAACACAGTCTTCTTCGTTTCGTTTGGAAAGAACCACAGGTTTTGAAGTGGCTAAAAGTCCTTAATCTTAGTCACTCCAAGTACTTGATAGAAACCCCTGACTTTTCCGGACTACCAAGTCTTGCACAGCTCATTCTCAAAGATTGTCCAAGATTATGCAAAGTACACCAATCTATTGGATGTCTCTGCTATCTTACATTGCTAAATTTGCAGGACTGTACAAATCTAAGCAATCTCCCCAGAAAGATATATAAGTTGAAATCCTTAAAAACTTTGATTTTATCTGGTTGTTCGAAGATTGACTTAATGGAAAGAGATATAGTGGGATTGAAATCCTTGATAACTATAATGGCTGAAAATACAGTTACTAAACAATTGCCTTTTACAATTGTAAGCCCAAAAAGCATTGGATATATATTCCTACGTGGATGTGAGGAATTGTCACATAATCTTTTTCCTTCTATCATTCGGTCTCGGATGTGGCCAACAATGAATCCCCTATCTTATACTCATCCCTTCATGGATATGGAGGATAATAGTTGGGATGAAATTGCAGCATTTCTTAGAAGCCTTGCCAAAATCCGAAGTGTTCTGGTGGAATGTGACGCCGAGTTTCATCTATCTGAACAAGTAAAAACTATAGTGGTCGAATATGGTGGAAATATTACAGAATCAGCAATTTCAAAGAATCACCTCAAGTCTTTTCTGACTGGTATTGGAAGATACAAAGAATTCTTCAATACTCTAAGCGATAGCATACCTAAGGTATTTGCAAGCAGTGAGTCATGTGATGTTTCTCTCCCAGGTGACAATGATCCTTATTGGTTGGCCCATATGGGTGATGGACCTTCTGTTTCCTTCACTGTGCCTCAAGATCGTGTCGTGAAGGGAATGGCTTTGTGTGTAGTTTATTTATCAACCTTCGAAATCATTGAACCTGAACTTACTACTGTCTTAATTGTTAATTACACGAAGTGCACATGTCAGATACACAACCATGGCACAGTAATTTCCTTCAATAATGAAGATTGGCCTGACATGATGTCAAATTTAGGATCAGGAGACAAGGTGGAGATTTTTGTGAGTTTGGGTCACGATTTGGTGGTTAAGAACACAACTGTCTATCTTATAAATGACTTAGAAAAGGAGCCTGTGCCAAAGAACAAATCTCTCCTTAAATTCATAAAGAAAACTCTAATGTGA	3012	0.3888	MTSSISSMELESSSSKLPQMYDVLINFNGEDIQKKFVSHLDSALSAVGFTTFLHHPNAHNPLHIQQPVLNLSRIAIVVFTKTYSQSAWCLHQLQQIIKWHQTYCRHLLPVYYEIQPSDVRLQMGDFGKAFKATAEQAFSGQQLENGMSRWSHALTKAANLFGWDESNRRSDAELVDKIVKTVLHLPVLSATKFPVGLHSHMEDLIRTIKYKSTEVCSIAIYGQEGSGKTTLAKAIYHQIHDPFTEKSFIEDIGQVSERRGNLRLLEQLLSDVLKSKVEIDSFEMGRSMIREKLSGKRVLIVLDDAPEFNRELLWEWRHWFGGGSVIIITTIPENLPRIQQADFVFQVKLMNANESLELLSWHAFREPKPKQKYHFLAEKVVSYCGGLPLTLEVIGSYLYERTKEEWNSVLLLLANIPHHDVQGKLKISFDGLRNQMERDLFLDVCCSFVGKSRTYVTKILNGCGIDADSGIRVLIKHSLIQINKNNKLIMHSLLRQMGRKIIREISGKEPENSKLWFDKDARYSLSENTLFSFKCTKVIQTLPTRRDFFGRYPLQVRDRSRLLKFAGDSEYLFRNLRWISLRGFSSEYLPNHFYQHYPIAIEIKHSLLRFVWKEPQVLKWLKVLNLSHSKYLIETPDFSGLPSLAQLILKDCPRLCKVHQSIGCLCYLTLLNLQDCTNLSNLPRKIYKLKSLKTLILSGCSKIDLMERDIVGLKSLITIMAENTVTKQLPFTIVSPKSIGYIFLRGCEELSHNLFPSIIRSRMWPTMNPLSYTHPFMDMEDNSWDEIAAFLRSLAKIRSVLVECDAEFHLSEQVKTIVVEYGGNITESAISKNHLKSFLTGIGRYKEFFNTLSDSIPKVFASSESCDVSLPGDNDPYWLAHMGDGPSVSFTVPQDRVVKGMALCVVYLSTFEIIEPELTTVLIVNYTKCTCQIHNHGTVISFNNEDWPDMMSNLGSGDKVEIFVSLGHDLVVKNTTVYLINDLEKEPVPKNKSLLKFIKKTLM*	1004

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu10g0192	1003	Gene3D	-	183	342	IPR027417	-
	Pvu10g0192	1003	Gene3D	-	14	182	IPR035897	-
	Pvu10g0192	1003	CDD	AAA	217	338	-	-
	Pvu10g0192	1003	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	24	980	-	-
	Pvu10g0192	1003	SUPERFAMILY	L domain-like	567	757	-	-
	Pvu10g0192	1003	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	24	980	IPR044974	GO:0006952
	Pvu10g0192	1003	Pfam	TIR domain	21	187	IPR000157	GO:0007165
	Pvu10g0192	1003	ProSiteProfiles	TIR domain profile.	19	186	IPR000157	GO:0007165
	Pvu10g0192	1003	SMART	till_3	20	160	IPR000157	GO:0007165
	Pvu10g0192	1003	Gene3D	Ribonuclease Inhibitor	561	869	IPR032675	-
	Pvu10g0192	1003	PRINTS	Disease resistance protein signature	217	232	-	-
	Pvu10g0192	1003	PRINTS	Disease resistance protein signature	292	306	-	-
	Pvu10g0192	1003	PRINTS	Disease resistance protein signature	384	398	-	-
	Pvu10g0192	1003	PRINTS	Disease resistance protein signature	687	703	-	-
	Pvu10g0192	1003	SUPERFAMILY	"Winged helix" DNA-binding domain	421	522	IPR036390	-
	Pvu10g0192	1003	SUPERFAMILY	Toll/Interleukin receptor TIR domain	12	163	IPR035897	-
	Pvu10g0192	1003	Pfam	NB-ARC domain	200	415	IPR002182	GO:0043531
	Pvu10g0192	1003	Gene3D	-	350	440	IPR042197	-
	Pvu10g0192	1003	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	178	443	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu10g0192	Pvu-Chr10	2859613	2863448	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu10g0192	618	733	WRKY Transcription Factor Family	AT4G12020	35.345	7.39e-07	51.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu10g0192	-		-	pvu:PHAVU_010G0291001	1394.79