Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0168 ATGGAACAGGGTCAATGTTGGACAAAGAGGAAGTACTCTTTGAGCTCTAGTCTTAGTTCACCAGCCAACCCTTCCTATGGTGACTCGTGGGAAGAACAAGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGCGTATGGCCTCCAAGATCATACTCTTGTAGCTTTTGCAGAAGAGAGTTTAGGTCAGCGCAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCCACAATGAAATTCTATGTCATGACCTTCAAACTCAACTCCATAAGCCACTTCAAAGTCCTTTTGCTTCTTTGGATGATTACCTATACCCTTCTCCTGTTTGTGGATTGGCTTATAAAAAAACTAAACCTAATTCTTATCCTGATTTTGTTGCTTCACCTTCTTCACCCTCACATTCCAAGGCCTTATTGGCTCCATCGCTTAATAGTGGTAACTCCAGAGAGGAAACCATGATTCCATTTTATGATTCCACTATTCTCCACAAGATTTCTCCTGTCAGTAATTCTTCCGAAACATGGCCAAATTTAGCTGAAGATCAGGGACTATATTCATGTAAGTTCCATCCTCAAGCTGATACCAAGAAACCCTCCAAGGGAATAATAGATTCTAGATGTTGGGGTAGTGATGATATTGATGGGGATATGAGCCTGAATTCAGTTGTGTATAGTACTCACCCATTTTTGCAGTTTGAGAGTACTAAAGAGGCAGATCATATGAGTTGCATGAAGAGGAAAACAGATGCTTCCTCATCGCCATTTTCCCCAAAGTCAAGCTCAGTTGATAGAAATGATGTGCAGCCAAAGATGCTTGAATTTAGCCCTAGCTCACTGGAAGAGCTAGATCTGGAGTTAAGGCTTGGTTACAGGTCCAAGGTATAG 924 0.4242 MEQGQCWTKRKYSLSSSLSSPANPSYGDSWEEQAFAEDAANSLGGCVWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCHDLQTQLHKPLQSPFASLDDYLYPSPVCGLAYKKTKPNSYPDFVASPSSPSHSKALLAPSLNSGNSREETMIPFYDSTILHKISPVSNSSETWPNLAEDQGLYSCKFHPQADTKKPSKGIIDSRCWGSDDIDGDMSLNSVVYSTHPFLQFESTKEADHMSCMKRKTDASSSPFSPKSSSVDRNDVQPKMLEFSPSSLEELDLELRLGYRSKV* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0168 307 SUPERFAMILY beta-beta-alpha zinc fingers 50 79 IPR036236 -
Pvu10g0168 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Pvu10g0168 307 MobiDBLite consensus disorder prediction 260 279 - -
Pvu10g0168 307 Gene3D Classic Zinc Finger 49 102 - -
Pvu10g0168 307 PANTHER OS07G0101800 PROTEIN 1 306 - -
Pvu10g0168 307 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 306 - -
Pvu10g0168 307 MobiDBLite consensus disorder prediction 254 282 - -
Pvu10g0168 307 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Pvu10g0168 307 SMART c2h2final6 53 75 IPR013087 -
Pvu10g0168 307 Pfam C2H2-type zinc finger 53 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0168 Pvu-Chr10 2590008 2591590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0168 29 302 C2H2 Transcription Factor Family AT2G37740 33.119 9.01e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu10g0168 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0168 - - gmx:100801427 509.22