Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0139 ATGGTTTTTACTTCCATACCAGCTTCTTATTTTGATGCAGCCAACTGGCAGCAACAGCAACCAAATAGCCAAGGCGGAGGCAGTGGTTCCACCTCACGGCAGCTTCTTCCACCACCGCCACAGCCACAGCCACCGCTTCCGGGTGCAATGCAGTCTCATGGAGAGGGCTCAATCAGGCCAGGATCCATGGCTGATAGGGCAAGGATGGCCAACATGCCAATGCCAGAGGTTGCACTCAAGTGTCCACGCTGCGAATCAACCAACACTAAATTTTGCTACTTCAACAACTACAGTCTCTCCCAGCCCCGCCACTTCTGCAAGACCTGCAGAAGGTACTGGACCAGAGGTGGCGCCCTGAGGAGCGTCCCCGTCGGCGGAGGCTGCAGGAGGAACAAGCGGAGCAAAGGAGGCGGCGGCTCCAACTCTCCGGCAAGCTCTGACCGCCAGACAGGAAGTGTCAACTCCACCAACTCGGTATCTTCCAAGAGTGAGAGAATAGGGCTTGCACCCCACCTTCCACCGCTCAGATTCATGCCTCCATTGCATCAATTCGCTGAGTTTGGAGATGCAGATATTGGCCTAAACTATGGCCTCAGTTATGGCCCAGTGGGAGGAGTTGGGGACTTGAGTTATCAAATTGGAGCAAGTGCTTTTGGTGGTGCCACTTCAATCTTGTCTGCACCTGGTTTGGAGCAATGGAGAATGCCACAGCAGTTTCCCCTCCTTGCTTCCTTGGAAGGTTCATCACCAGCTTCTAATTTATACCCTTTTGAAGGCAATGCTGAGGTGAGTGGATACATGAGGCCAAAGGTTTCAACTTCTGGGATCATGACTCAGCTAGCTTCAGTGAAAATGGAAGATGGTAGGGAACCTAACTTGCCAACCCATTTCTTGGGAAACAATAATCAAGTGAGTGAACAATATTGGAGCAGTGCTACTTCTGCATCTTGGACTGATATTTCTGGCTTTAGCTCTTCTTCAACTACTACCAACCATCTATAG 1002 0.512 MVFTSIPASYFDAANWQQQQPNSQGGGSGSTSRQLLPPPPQPQPPLPGAMQSHGEGSIRPGSMADRARMANMPMPEVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGGGGSNSPASSDRQTGSVNSTNSVSSKSERIGLAPHLPPLRFMPPLHQFAEFGDADIGLNYGLSYGPVGGVGDLSYQIGASAFGGATSILSAPGLEQWRMPQQFPLLASLEGSSPASNLYPFEGNAEVSGYMRPKVSTSGIMTQLASVKMEDGREPNLPTHFLGNNNQVSEQYWSSATSASWTDISGFSSSSTTTNHL* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0139 333 Pfam Dof domain, zinc finger 78 133 IPR003851 GO:0003677|GO:0006355
Pvu10g0139 333 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677|GO:0006355
Pvu10g0139 333 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 11 329 - -
Pvu10g0139 333 MobiDBLite consensus disorder prediction 14 62 - -
Pvu10g0139 333 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 329 IPR045174 GO:0003700|GO:0006355
Pvu10g0139 333 MobiDBLite consensus disorder prediction 135 164 - -
Pvu10g0139 333 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677|GO:0006355
Pvu10g0139 333 MobiDBLite consensus disorder prediction 123 165 - -
Pvu10g0139 333 MobiDBLite consensus disorder prediction 14 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0139 Pvu-Chr10 2139058 2140753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0139 1 326 C2C2-Dof Transcription Factor Family AT2G37590 40.000 3.02e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu10g0139 zf-Dof 6.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0139 - - vra:106773377 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1019 8 10664656 10666281 Pvu10g0139 10 2139058 2140753 PCT