Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0137 ATGGAACGCCGGAAAACGCTCACGATGAACTGGGACGGCCTCGGCGATGTTGACGACGACGATGCCTTCTTCGAGTCTTACAACCGCCTCTCCACCGCCGTGCCCCAAGACCTCGCTTCCTCCTCCGACGATGACGACGGCGAATTCGACGACCCCCGCCTCTCCTTTGCCTCCGCCGTCTCCTCCTCTCTCTCGCGACAAAGAAGCATTTCCTCCACGATGGATGCTGCTCCGGATTACGGCGTATGGATGGCGGCCCCCGTCTCAATCAACGAGCGGCGCAAGCGTCTGCTCCACGGAATGGGCCTAGACGACGACAAAGAGTTCTCGAAAGCAACGCCGGTGGAACTCGGTCACTCAGTTTCAAAGCACACAAACCCCGTTCCCTCCGAAAAACCAACACTCACGTCTACTTCCGCTACTCCCGTTACCGATAAACTTTCAACGTCGCCGGCTACCGTTTCAACGCCGCCGGCTACCGTTTCAACAGACAAGGTGTCGTCGGAGAATTCCTCTCTTCAGTTAGTTATCGTTCGTTCGCGTTCCGAGGGAGACATAGAGTTGTTCTCGATCGAGAGGTCAAGAAGAGAAGACTTCATCGGAAAGGGTTCAAAGCAGCGGTTGACGAGAACCGTGTCAGAGACGGCTTTCCAGCGCCCGCGTTGGGGAACGAGAGACAGAGCGGTTGTGAGGGATTCCGACGAATCAGCGGAGTCGAAGCCGAAAAGCACGAAACTCGAGGATTCGGGAGTGCGAGCGTTTTTCCTGATAAAGAACTTGGACACGGGGACGGAGTTTATAGTGAACGAGTGCACCGAAAGCGGTGCGTGGAACAGGTTGAGTGATTTGCAGACGGGGAAGCAGTTATCGATGGAGGAGTTTGAAAAGACGGTGGGAAAATCGCGCGTGGTTAACGAGCTTATGCGACGCGGGGCGAGGAACGAGAGTTTGTCGCGGAAGCTGACGTCGAGTTCGTACATTTCGAGGAGTTTGAGGATGAGCAAGAGAAGAGGCGCCGCATTTTTGAAGAACATAAAGGGCGTGGCGAGTGGGTTCATTGGGGAGAGAGAAAGAGAGGCCGTGGCGGCGCAAGCAGCAGCCGCCAATGCGGCGGCGGAGAAGAGTCAATGGGTGCGAGTGCGGCAGAGCGGGAAATCGCACAAGGAGGTGTCGGCGTTACATCTGTGTCAGGAGATCCAGGGTCACGAGGGCTCCGTTTGGACGATCAGGTTCAGTTTGGATGGGAGGTTTCTGGCGAGTGCAGGTGAGGACAAGGTGATCAACGTGTGGGAAGTGCAGGAGTGTGAGGTTATGTCCTTGAGACCCGACGAGGGAAGTCTCACTCCGATTCACCCCTCCTTGCTTCCCTCCAACGACCTTTCGCCTTTGTCTCCTGCTGCTGAAAAGAAGAAGAAGACCAAGTTCGGAAGCAAAAGAGGCCCCGCCATTCCTGAATATGTTCATGTTCCTGAAACTGTCTTCTCACTTTCCGACAAACTCTTCTGCACTTTCGAAGGACACTCCGATGATGTTTTGGATTTGTCATGGTCTAAATCCCAGCTACTTCTGTCATCTTCAATGGATAAAACGGTGAGATTATGGGACTTGGAGAGTAAGACATGCTTGAACACGTTTACCCATAACGACTATGTAACCTCCATACAGTTCAATCCTATCGAAGATGGTATTTTCATAAGTGGTTCGCTGGACGCAAAGGTGAGAATCTGGAGCATCCCTGAACGGCAGGTTGTGGATTGGATTGATATCCATGAAATGGTTACTGCAGTCTCCTTCACACCTGATGGTCAGGGTGCTCTTGTTGGTACCCACAAGGGTGGTTGTCGTACATATAGCACAAAAGATTGCAAACTATCTCAAACAGGAACAATTGAGATTCGACACAAGAAGAAAAACCAACTAAGAAAGGTCACTGGTTTTCAGTTTGCTCCGGGAAAACCATTACAAATTCTTGTAACTTCAGCAGATTCCAGGATAAGAATATTGGACGGTTCAGAAGTAGTTCAAAAGTACAGAGGTTTTCGAAATGCAAACAGTCAAATTGCAGCTTCGTTTAGTCCAGATGGAAGATATATTATTAGTGCAAGTGAAGATTCTGAAATATATATATGGAAGCATGAAGAGCATAGAAGTGCAGGCAGTGGAAAAGGTAAAAATGTGCTAGTTACTCGTTCTCACGAGCACTTCCATTGCAAAGATGTTTCAGTAGCAATACCATGGAATAGTACCATCAAAGGTGATCCCCCGCTAGTGCAAATGCATTCCAAAAAGCATTCAAAACGTTTTCAGGCTGGTTTTAATGGTGTAGAAGAAACAGCATCTCCATCTGCTAAGAAAAATCTTCCACCCCTTCCTAAGAAAAGTAATAGCCTTACCTCAGAAGGAGCTTCAAATTCTCCTAGGAAAGACCCAGCAGGAACTTCTCATGCAGAATCTGGACTTGGTGATTCATTTGCAAACAGCATTAAGAGAATGCTGCCTCAGTCTCCATTGAAAGTTAACTGCCTCACCACAGAGGAAGAGGAGCTTGAAACATTTTCATGCACAGATTCAGGATTTAGTGATTCTTTTAACTCAACCACATCCTCAGCAAGGTGTGATTCACCTTCTTCAACTGCATCATTTTCCTCCTCTTATTCATTATCGGACGCTAGCCATGCTTCCTCCTCAGTTCTTCCTTCAGCATGGGGTTTGGTAATTGTGACAGCTGGGTTTGGAGGTGAAATCAGATGCTATCAAAATTTTGGGTTGCCTAGAAGGATAGGTAGACAACCATGGTATGGTAACGCTTAG 2811 0.4906 MERRKTLTMNWDGLGDVDDDDAFFESYNRLSTAVPQDLASSSDDDDGEFDDPRLSFASAVSSSLSRQRSISSTMDAAPDYGVWMAAPVSINERRKRLLHGMGLDDDKEFSKATPVELGHSVSKHTNPVPSEKPTLTSTSATPVTDKLSTSPATVSTPPATVSTDKVSSENSSLQLVIVRSRSEGDIELFSIERSRREDFIGKGSKQRLTRTVSETAFQRPRWGTRDRAVVRDSDESAESKPKSTKLEDSGVRAFFLIKNLDTGTEFIVNECTESGAWNRLSDLQTGKQLSMEEFEKTVGKSRVVNELMRRGARNESLSRKLTSSSYISRSLRMSKRRGAAFLKNIKGVASGFIGEREREAVAAQAAAANAAAEKSQWVRVRQSGKSHKEVSALHLCQEIQGHEGSVWTIRFSLDGRFLASAGEDKVINVWEVQECEVMSLRPDEGSLTPIHPSLLPSNDLSPLSPAAEKKKKTKFGSKRGPAIPEYVHVPETVFSLSDKLFCTFEGHSDDVLDLSWSKSQLLLSSSMDKTVRLWDLESKTCLNTFTHNDYVTSIQFNPIEDGIFISGSLDAKVRIWSIPERQVVDWIDIHEMVTAVSFTPDGQGALVGTHKGGCRTYSTKDCKLSQTGTIEIRHKKKNQLRKVTGFQFAPGKPLQILVTSADSRIRILDGSEVVQKYRGFRNANSQIAASFSPDGRYIISASEDSEIYIWKHEEHRSAGSGKGKNVLVTRSHEHFHCKDVSVAIPWNSTIKGDPPLVQMHSKKHSKRFQAGFNGVEETASPSAKKNLPPLPKKSNSLTSEGASNSPRKDPAGTSHAESGLGDSFANSIKRMLPQSPLKVNCLTTEEEELETFSCTDSGFSDSFNSTTSSARCDSPSSTASFSSSYSLSDASHASSSVLPSAWGLVIVTAGFGGEIRCYQNFGLPRRIGRQPWYGNA* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0137 936 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 578 IPR001680 GO:0005515
Pvu10g0137 936 Gene3D - 352 461 IPR015943 GO:0005515
Pvu10g0137 936 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 538 - -
Pvu10g0137 936 PANTHER WD REPEAT DOMAIN 44 6 929 IPR040324 -
Pvu10g0137 936 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 440 IPR001680 GO:0005515
Pvu10g0137 936 SMART WD40_4 497 535 IPR001680 GO:0005515
Pvu10g0137 936 SMART WD40_4 670 711 IPR001680 GO:0005515
Pvu10g0137 936 SMART WD40_4 880 919 IPR001680 GO:0005515
Pvu10g0137 936 SMART WD40_4 538 577 IPR001680 GO:0005515
Pvu10g0137 936 SMART WD40_4 392 431 IPR001680 GO:0005515
Pvu10g0137 936 SMART WD40_4 633 669 IPR001680 GO:0005515
Pvu10g0137 936 SMART WD40_4 580 618 IPR001680 GO:0005515
Pvu10g0137 936 MobiDBLite consensus disorder prediction 789 811 - -
Pvu10g0137 936 MobiDBLite consensus disorder prediction 115 166 - -
Pvu10g0137 936 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 544 IPR001680 GO:0005515
Pvu10g0137 936 Pfam WD domain, G-beta repeat 540 577 IPR001680 GO:0005515
Pvu10g0137 936 Pfam WD domain, G-beta repeat 398 430 IPR001680 GO:0005515
Pvu10g0137 936 Pfam WD domain, G-beta repeat 676 711 IPR001680 GO:0005515
Pvu10g0137 936 Pfam WD domain, G-beta repeat 501 535 IPR001680 GO:0005515
Pvu10g0137 936 MobiDBLite consensus disorder prediction 776 820 - -
Pvu10g0137 936 MobiDBLite consensus disorder prediction 448 477 - -
Pvu10g0137 936 ProSitePatterns Trp-Asp (WD) repeats signature. 418 432 IPR019775 -
Pvu10g0137 936 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 929 - -
Pvu10g0137 936 MobiDBLite consensus disorder prediction 34 53 - -
Pvu10g0137 936 Gene3D - 486 762 IPR015943 GO:0005515
Pvu10g0137 936 PRINTS G protein beta WD-40 repeat signature 418 432 IPR020472 -
Pvu10g0137 936 PRINTS G protein beta WD-40 repeat signature 522 536 IPR020472 -
Pvu10g0137 936 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Pvu10g0137 936 SUPERFAMILY WD40 repeat-like 393 917 IPR036322 GO:0005515
Pvu10g0137 936 ProSiteProfiles Trp-Asp (WD) repeats profile. 690 720 IPR001680 GO:0005515
Pvu10g0137 936 ProSitePatterns Trp-Asp (WD) repeats signature. 522 536 IPR019775 -
Pvu10g0137 936 MobiDBLite consensus disorder prediction 220 244 - -
Pvu10g0137 936 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 433 - -
Pvu10g0137 936 MobiDBLite consensus disorder prediction 119 166 - -
Pvu10g0137 936 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 578 - -
Pvu10g0137 936 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0137 Pvu-Chr10 2094836 2100482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0137 497 708 U-box Gene Family AT2G33340 27.477 4.98e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0137 K20241 - gmx:100779364 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1026 8 10843744 10847698 Pvu10g0137 10 2094836 2100482 PCT