Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0122 ATGGCTGAGGGTTTTGAGGCTTACCATGTGCCACAGCAAAGCAGAAGAGATAAGCTAAGAGTTGTGGTGACACAGAACCAACATGGTCTCGTTGAACCCTCCACTTTGCTTCCTTTGTACGACCCTTCTTCGTTCATATCTTCTGAGTTGCTAACCAGCTTCCACAACACCCACAAACACAACTTGGGTTGTGGTGTGAAGGAAGAACGTGCAAATTTGATGATGGGTTTTGGAGGTGGAGGCGTCATCAACAATGGCTCTTCTTCTTCTTCGTGTTGTTCTTCTAACTCCTCTTCGGTTTCTTATTTGGATCCTGAATCTTCGTTGCCTCTGAACCAAGCCACAATTCAGGTTATTAACAATAACAACAACAACAACATGTTTCTTTACCAAGCACAGAACCTGGGAGAGTTTGATCAGGGTTATAATAATAATAATAATGGTAGTGAGATCATGGTGTTTAAGCCTGAGCCTTTGTCTTTGTCTCTGTCATCACATAACAACGGTGTGAATCTTCAGCGATATGGATCTGTGGTTTATGGTGATAAGGTTGGTGGGGTTGGTGGTGGTGGATGTGTGGCTTATGGTGGTTCTGGTTTGAATGAAGTTTCGAGGTGCACGGTGCCTATGGGGCCATTTACTGGTTATGCTTCTATATTGAAGGGATCGAGGTTCCTGAAGCCTGCGCAGCAATTATTGGAAGAGCTATGTGATGTTGGTGGAGTTTGTGCTGAGAACATGGTGGCTGATGCATCGTTGATGGAACCTATTCCTCTTCCTCCTCCTCAGAGTTCAAGTGAAGATCTATTAGGGGATCAAGGGGGTGACCAGGGTCGCAAAAAGTCAAGACTGTTAACTATGCTTGATGAGGTTTACAGGAGGTACAGGCAATACTATCAGCAGATGCATGAAGTAGTAACATCATTTGAGTATGTTTCAGGCCTCAGCAATGCAGCTCCCTATGCAAGTTTGGCTATAAAAGCCATGTCCAAACATTTTAGATGCTTGAAAAATGCAATTACTGACCAACTTCAGTTTGCCAATAAAGCTCATTTTCACATCAGCAACAGGAAGGATGAGTCTTCAAGGTTTGGCAACAGTGATAGAGGCCCATACAGCCAAAGGCCAGGGTTTCTTGAGCACCAACCTGTTTGGCGGCCTCAAAGAGGACTCCCCGAGCGCGCTGTGACCGTTCTCAGAGCATGGTTGTTTGAGCACTTTCTGCACCCTTATCCTACTGATACAGACAAGATAATGTTGGCTAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTCATTAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACATATGCTAGAGACACGGCAGGTTCACAAGAATTCACAGAAGGAAGAACATTGCAGGAACAAGTCAAGTGATCAATTACCTTCTGATAACTCCATTGTTTCTGAGAATCCATCTGGGTCAACAGAAAAGTTTCAAGATGCTCCTTACAAGAGAGCTACAGAAGAACTTCCTAACATATCAGTAAGGACTCAGGAGCAGCTGAATCTTGCCTGCACAAACAATCAGCCCGGTGGTGTTGGAGTGAACATGGGTGGCAGTGCAAGCAATAGTGTGTCACTCACACTTGGACTTTATCAAAATCATGGTATTGGGTTGGCTGAACCTTTTACCTTGAATGCAGCACAGCGATTTGGTGTTGCTCTTGAAACCAACAATGAAGGCTATGTGATGAGTGGATATGAGTCACAGAATAGGCATTTTGGAGGACAACTGTTGCATGACTTTGTAGGCTGA 1803 0.4432 MAEGFEAYHVPQQSRRDKLRVVVTQNQHGLVEPSTLLPLYDPSSFISSELLTSFHNTHKHNLGCGVKEERANLMMGFGGGGVINNGSSSSSCCSSNSSSVSYLDPESSLPLNQATIQVINNNNNNNMFLYQAQNLGEFDQGYNNNNNGSEIMVFKPEPLSLSLSSHNNGVNLQRYGSVVYGDKVGGVGGGGCVAYGGSGLNEVSRCTVPMGPFTGYASILKGSRFLKPAQQLLEELCDVGGVCAENMVADASLMEPIPLPPPQSSSEDLLGDQGGDQGRKKSRLLTMLDEVYRRYRQYYQQMHEVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQLQFANKAHFHISNRKDESSRFGNSDRGPYSQRPGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQVHKNSQKEEHCRNKSSDQLPSDNSIVSENPSGSTEKFQDAPYKRATEELPNISVRTQEQLNLACTNNQPGGVGVNMGGSASNSVSLTLGLYQNHGIGLAEPFTLNAAQRFGVALETNNEGYVMSGYESQNRHFGGQLLHDFVG* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0122 600 Pfam Homeobox KN domain 402 441 IPR008422 GO:0003677|GO:0006355
Pvu10g0122 600 MobiDBLite consensus disorder prediction 357 378 - -
Pvu10g0122 600 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 18 579 - -
Pvu10g0122 600 SMART prehox3 214 342 IPR006563 -
Pvu10g0122 600 CDD homeodomain 385 446 IPR001356 GO:0003677
Pvu10g0122 600 MobiDBLite consensus disorder prediction 474 493 - -
Pvu10g0122 600 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 18 579 - -
Pvu10g0122 600 MobiDBLite consensus disorder prediction 458 473 - -
Pvu10g0122 600 MobiDBLite consensus disorder prediction 458 500 - -
Pvu10g0122 600 ProSiteProfiles 'Homeobox' domain profile. 382 445 IPR001356 GO:0003677
Pvu10g0122 600 SMART HOX_1 385 449 IPR001356 GO:0003677
Pvu10g0122 600 SUPERFAMILY Homeodomain-like 387 452 IPR009057 -
Pvu10g0122 600 MobiDBLite consensus disorder prediction 255 278 - -
Pvu10g0122 600 Gene3D - 388 450 - -
Pvu10g0122 600 Pfam Associated with HOX 219 341 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0122 Pvu-Chr10 1834966 1840450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0122 139 600 Homeobox Transcription Factor Family AT5G02030 47.992 1.85e-117 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu10g0122 POX 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0122 - - gmx:100805512 1004.2