Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0119 ATGTTGAGCCGCGCGTCAAATGTTTCGGCCGAAGTGGTTGGTTGGGGTGAGGGTGAGGATGAGCTGTATGAGCAGCTGTGGAAGGCTTGCGCGGGACCACTGGTGGATGTTCCTCGTGCTGGCCAGAGAGTGTTCTATTTTCCACAAGGCCACATGGAGCAATTAGAGGCTTCAACCAACCAGGAATTGAATCAGAGGATTCCTCTGCTGCAGCTTCCCACGAAAATCCTTTGTCGCGTCGTGAACGTTCATTTACTGGCTGAGCAAGAAACGGATGAGGTTTATGCGCAGATCACTTTGGTCCCGGAATCTAATCAAGATGAGCCTACAAGTGCTGATACGTGCACTGCTGAAGCTCCAAGGGCACCGGCTCACTCGTTCTGCAAGGTCTTGACTGCTTCTGATACTAGCACCCATGGTGGCTTCTCTGTTCTTAGGAAACATGCTACCGAGTGCCTTCCTGCATTGGATATGTCCCAACCAACACCAACCCAGGAATTGGTTGCAAAGGATCTTCATGGTTATGAATGGCGATTTAAGCATATATTTAGAGGTCAGCCACGCAGACACTTGCTCACGACTGGTTGGAGTACTTTTGTGACTTCCAAAAGATTAGTTGCTGGAGATACCTTTGTGTTCTTGAGAGGGGACAATGGGGAATTACGTGTCGGAGTGAGGCGTCTAGCTCGCCAGGCCAGTAGCATGCCTTCATCGGTGATTTCCAGTCAAAGCATGCACCTGGGAGTTCTTGCAACTGCCTCTCATGCTGTTGCAACTCAGACTCTTTTTGTAGTATATTATAAGCCAAGGACGAGCCAGTTTATCATAGGTGTGAACAGGTATTTGGAGGCTGTGAGCACGAAGTTTGGTGTTGGCATGAGGTTTAAGATGAGATTCGAGGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAATTGAAGATATTTCTCCTCATTGGGAAAATTCAAAATGGCGATCGCTCAAGGTTCAATGGGATGAACTTGCAGCTGTTCCAAGACCTGAGAGGGTTTCACCATGGGAAATAGAGCCATTTATTGCTTCTGCTTCTACACCCTCAGTTCAACCCACTATTGTAAAGACTAAAAGGCCCCGACCATCCAGTGAAGTTCCAGATGTTGATACAACATCTGCGGCTTCTGTTTTCTGGGATACCGATCTGCCACAGCCTGATACCACACAAATCAATGTTTTGGCCGAAAGCAAACAGAATGACAAAACTGGTTCATGGCATCACATGCAAACTGACATGAATAGTAAAAGCAACAGCAACAACACTATGTTAAGGAATCAGACCGAAGGAAGTTGGCTGTCCTCTCCCCATTCCAGTTGTCCATCTCATTTGTTTCAAGACACAACAGATGATAGCAAGAGCGTCTCGGGTTGGCCTGTTTCAAAGCCTCATTCGTCCAGATTGAGCAATGAGCATGTGCTTGACCAAGTTGACAAGGAGAACAAAGTTGAGACTGCTGCAAGTTATCGGTTGTTTGGAATTGATCTTATTGATCATTCTAGGAACTCACCTGCTGTAGAGAAGGCATCTCCGCATGCAGTAAATGTAGCCAAAGTTACTACTGAAGGATGTACTAGCACCTTGTCCCAAACAGATGCTGGTCATATGTCAGAGGTACCAAATTCTTCTTCCAAGGAGAGGAAACAAGAACAGCAACAAGTATCTCCGAAGGAGACTCAGAGCAAGCAAGTTTGTAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTAGATTTAACAATTTTGGATGGGTATGATAAACTTATAAATGAATTGGAGGAGATGTTTGACATAAAGGGACAGCTTCAATACAGGAATAAGTGGGAAATTGTCTTCACCGATGATGAAGGTGACATGATGCTTGTGGGAGATGATCCATGGCCTGAATTCTGTAGTATGGTGAGAAGAATCTTCATTTGTTCGAGTCAGGATGTGAAGAAGATGTGTTGTGGAAGCAAACTGCCAATCTCTTCAGTGGAAGATGGGACTGTAATAAGCTCAGAAACAACTGAAACCTGA 2082 0.4587 MLSRASNVSAEVVGWGEGEDELYEQLWKACAGPLVDVPRAGQRVFYFPQGHMEQLEASTNQELNQRIPLLQLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPTSADTCTAEAPRAPAHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIGVNRYLEAVSTKFGVGMRFKMRFEGDDSAETDKRFSGTIVGIEDISPHWENSKWRSLKVQWDELAAVPRPERVSPWEIEPFIASASTPSVQPTIVKTKRPRPSSEVPDVDTTSAASVFWDTDLPQPDTTQINVLAESKQNDKTGSWHHMQTDMNSKSNSNNTMLRNQTEGSWLSSPHSSCPSHLFQDTTDDSKSVSGWPVSKPHSSRLSNEHVLDQVDKENKVETAASYRLFGIDLIDHSRNSPAVEKASPHAVNVAKVTTEGCTSTLSQTDAGHMSEVPNSSSKERKQEQQQVSPKETQSKQVCRSRTKVQMQGVAVGRAVDLTILDGYDKLINELEEMFDIKGQLQYRNKWEIVFTDDEGDMMLVGDDPWPEFCSMVRRIFICSSQDVKKMCCGSKLPISSVEDGTVISSETTET* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0119 693 MobiDBLite consensus disorder prediction 416 485 - -
Pvu10g0119 693 Pfam AUX/IAA family 628 667 IPR033389 -
Pvu10g0119 693 Pfam AUX/IAA family 560 618 IPR033389 -
Pvu10g0119 693 Gene3D - 577 670 - -
Pvu10g0119 693 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pvu10g0119 693 MobiDBLite consensus disorder prediction 543 582 - -
Pvu10g0119 693 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Pvu10g0119 693 SMART B3_2 127 229 IPR003340 GO:0003677
Pvu10g0119 693 MobiDBLite consensus disorder prediction 416 483 - -
Pvu10g0119 693 SUPERFAMILY CAD & PB1 domains 584 658 - -
Pvu10g0119 693 CDD B3_DNA 125 227 IPR003340 GO:0003677
Pvu10g0119 693 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Pvu10g0119 693 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu10g0119 693 Gene3D - 288 362 - -
Pvu10g0119 693 Gene3D - 124 228 IPR015300 -
Pvu10g0119 693 ProSiteProfiles PB1 domain profile. 582 663 IPR000270 GO:0005515
Pvu10g0119 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 682 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu10g0119 693 PANTHER AUXIN RESPONSE FACTOR 16 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0119 Pvu-Chr10 1784429 1789031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0119 18 675 B3 DNA Binding Superfamily AT4G23980 58.459 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu10g0119 B3 7.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0119 K14486 - gmx:100779003 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1222 8 14885029 14890156 Pvu10g0119 10 1784429 1789031 PCT