Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0101 ATGAAGGAGAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTATTACGTTCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTCGTGTCTCAGCGCATGAACACAACTCTGAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTGAAGCCTGGCATCAAGAAGGGGTCTCTAACGGAGGAAGAGCAGCGCCTTGTAATCCGGCTTCAAGCGAAACACGGCAACAAGTGGAAGAAAATTGCTGCAGAAGTTCCAGGTAGAACTGCCAAGAGGTTAGGGAAGTGGTGGGAAGTGTTTAAGGAGAAGCAACAAAGAGAGAATAAGGAGCTCAATAGAATCCCTGACCCTATTAACAACAGCAAGTACGAGCACATTCTTGAGAGTTTTGCTGAAAAACTAGTAAAGGAACAACATCCTTCACCATCATTTGTTATGGCTGCTTCTAATGGGACATTTCTGCGTACTGACACACCAGCACCTGCATCAGCCTTGCTTCCTTCTTGGCTTTCCAATTCTAGTAGTGCTGCTGCTGCTGCTGGCCCAAGTTCCCTTTCTGTGACACTAAGTCTTTCTTCCTCAACAGTTGCTGCACCTCCATTCTCATGGTTGCAACCTGATAGGGGACCAGACAATGTTCCTTTTGTTTTGGGGAATATACCAGCTTTCAGTGAAAACATGCTGATATCTCAGATGGTGGAGCACTGCAAAGAGTTGGAAGAGGGACAACGAGCTTTGGGTGCTCACAAGAAGGAGGCAGGGTGGCGGTTAAGCCGGGTGGAGTTGCAGTTGGAGTCAGAGAAGGCAAGCCGAAGAAGGGAGAAAATGGAAGAGTTTGAAGCAAAGATGAAGGCTCTTCAGGAAGAGGAGAGAGCTGCGTTGTGCAGAATCGAAGCAGAATACAGAGAAGAGTTAGCTGCATTGAAGAGAGATGCTGAAAACAAGGAACAAAAGTTAGCAGAACAATGGACTGCAAAGCATTTGCAGCTTACTAGGTTGCTAGAGCAGATTGGATGCAGAGGAGGGCTGCTTGAGCCAAATGCAAGATGA 1059 0.4684 MKERQRWRAEEDALLRSYVKQYGPREWNLVSQRMNTTLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRENKELNRIPDPINNSKYEHILESFAEKLVKEQHPSPSFVMAASNGTFLRTDTPAPASALLPSWLSNSSSAAAAAGPSSLSVTLSLSSSTVAAPPFSWLQPDRGPDNVPFVLGNIPAFSENMLISQMVEHCKELEEGQRALGAHKKEAGWRLSRVELQLESEKASRRREKMEEFEAKMKALQEEERAALCRIEAEYREELAALKRDAENKEQKLAEQWTAKHLQLTRLLEQIGCRGGLLEPNAR* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0101 352 Pfam Myb-like DNA-binding domain 7 67 - -
Pvu10g0101 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Pvu10g0101 352 Coils Coil 301 325 - -
Pvu10g0101 352 Gene3D - 62 128 - -
Pvu10g0101 352 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Pvu10g0101 352 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Pvu10g0101 352 CDD SANT 6 53 IPR001005 -
Pvu10g0101 352 SMART sant 58 106 IPR001005 -
Pvu10g0101 352 SMART sant 3 55 IPR001005 -
Pvu10g0101 352 Gene3D - 4 58 - -
Pvu10g0101 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Pvu10g0101 352 CDD SANT 63 104 IPR001005 -
Pvu10g0101 352 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 351 - -
Pvu10g0101 352 PANTHER TRANSCRIPTION FACTOR AS1 1 351 IPR031055 GO:0005634|GO:0006351|GO:0010338
Pvu10g0101 352 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Pvu10g0101 352 Coils Coil 272 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0101 Pvu-Chr10 1534405 1538042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0101 1 343 MYB Transcription Factor Family AT2G37630 63.215 3.85e-144 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu10g0101 Myb_DNA-bind_6 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0101 K09422 - gmx:100101908 557.37