Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0056 ATGTCAAATCCTCAGATGGGTCGTGTGGATTTGGAGCAAGGGAGTCACCAGCGTTCTATGAGTGGCAGTGACACGAGCATGTGCTCTTCTGATGCAGAGAATGGTTCCTGCTACTCCCGTTTCTATTCAACAAATGGTGACCATTATGATGATTGCACCTTTGCATGCGTTTCTGATGCTGCTGATTCCAGAAGGGCTTCTTCTTTTACTGATTGTTCAGTGGAGCTGGAAATTGAAAGTGGGGTTCCTGAAATCATGTTGCATTTGGCCACAGTGGAGAGGGATTGCAGGATTTGTCATCTTGGTTTGGATAGTGGAGTTCCCATTGAATTGGGGTGTTCTTGTAAGGATGATTTGGGTGCTGCTCACAAGAAATGTGCAGAGGCCTGGTTTAAGATTAAAGGGAACAGGACATGTGAAATATGTCATTCTATTGCCCAGAACATTGGTGGGGCAAATGAGGAGACAAGTCAGAGTTTGAGTGACAGCAACAATGATATTGTAGCATCCACAATCTCAAGAATAGCTCCTCCACTAGAAACTCGAAGATTTTGGCATAGCCATCGCTTCCTCAATTTTTTGCTTGCTTGTATAGTTTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATATGGCCTCATCATAG 648 0.4352 MSNPQMGRVDLEQGSHQRSMSGSDTSMCSSDAENGSCYSRFYSTNGDHYDDCTFACVSDAADSRRASSFTDCSVELEIESGVPEIMLHLATVERDCRICHLGLDSGVPIELGCSCKDDLGAAHKKCAEAWFKIKGNRTCEICHSIAQNIGGANEETSQSLSDSNNDIVASTISRIAPPLETRRFWHSHRFLNFLLACIVFAFVISWLFHFNMASS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0056 215 Pfam RING-variant domain 96 142 IPR011016 GO:0008270
Pvu10g0056 215 SUPERFAMILY RING/U-box 93 145 - -
Pvu10g0056 215 MobiDBLite consensus disorder prediction 1 30 - -
Pvu10g0056 215 PANTHER OS01G0850200 PROTEIN 7 213 - -
Pvu10g0056 215 CDD RING_CH-C4HC3_MARCH 96 143 - -
Pvu10g0056 215 ProSiteProfiles Zinc finger RING-CH-type profile. 88 149 IPR011016 GO:0008270
Pvu10g0056 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 151 IPR013083 -
Pvu10g0056 215 PANTHER ZINC FINGER, RING-CH-TYPE 7 213 - -
Pvu10g0056 215 SMART ringv_2 95 143 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0056 Pvu-Chr10 935071 941741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0056 62 215 C3H Transcription Factor Family AT5G05830 58.125 1.05e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0056 - - pvu:PHAVU_010G005300g 430.254