Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu10g0022 | ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCTGTTTGCCAATACTCTTGCTTCTGATTATCCAAGAGAAAGTGATGGGGCCTGCTTACAGATGCGATTGTCTTATAGTCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGACTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAGTTCTCATATACAAGGTATATGAGGATGGGAAGACAACCATGTCGATTTATGAGAGAAAAGCCAGTCTGAAGGATTTCTATGGTGTGATCTTTCCCTCTTTACTTCAACTCCACAGAGGAATCACTGATGTAGAAGAAAGAAAACAGAAGCAGTTATGTGCTACAAAGTACATGCCCAAAGATGTAAGAAAAGGAAAACTATCTGAAATGGATATTGAGAGAGAAGAAGAATGCGGTATTTGCATGGAGATGAACAACAAGGTTGTCTTGCCCAATTGCAACCACACGTTGTGTATAAAATGCTACAGGAAATGGCATTCAAGATCTCAATCTTGCCCTTTCTGTCGGAACAGTCTTCAAAGAGTAAATTCTGGTGACCTTTGGATCTACTTGAACAACAATGAGATAAATGACTTGGCTTCAATCAACAAGGAGAATCTAAAAAGACTATTTACGTTCGTTGACAAGTTGCCTCTGATTTTATCAGATCCTTCACTTATGTCTTATCCTCAGCGCTAA | 720 | 0.4014 | MRKSFKDSLKALEADILFANTLASDYPRESDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRVLIYKVYEDGKTTMSIYERKASLKDFYGVIFPSLLQLHRGITDVEERKQKQLCATKYMPKDVRKGKLSEMDIEREEECGICMEMNNKVVLPNCNHTLCIKCYRKWHSRSQSCPFCRNSLQRVNSGDLWIYLNNNEINDLASINKENLKRLFTFVDKLPLILSDPSLMSYPQR* | 240 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu10g0022 | 239 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE AIRP2 | 1 | 238 | - | - | |
Pvu10g0022 | 239 | ProSiteProfiles | Zinc finger RING-type profile. | 145 | 183 | IPR001841 | - | |
Pvu10g0022 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 217 | IPR013083 | - | |
Pvu10g0022 | 239 | SUPERFAMILY | RING/U-box | 125 | 188 | - | - | |
Pvu10g0022 | 239 | SMART | ring_2 | 145 | 182 | IPR001841 | - | |
Pvu10g0022 | 239 | Pfam | Zinc finger, C3HC4 type (RING finger) | 142 | 189 | - | - | |
Pvu10g0022 | 239 | ProSitePatterns | Zinc finger RING-type signature. | 160 | 169 | IPR017907 | - | |
Pvu10g0022 | 239 | PANTHER | RING FINGER PROTEIN 41, 151 | 1 | 238 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu10g0022 | Pvu-Chr10 | 536750 | 541026 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu10g0022 | 94 | 183 | C3H Transcription Factor Family | AT5G01960 | 33.333 | 5.11e-08 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu10g0022 | K25840 | - | pop:7466068 | 399.823 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pvu8g1080 | 8 | 11970519 | 11973727 | Pvu10g0022 | 10 | 536750 | 541026 | PCT |