Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0022 ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCTGTTTGCCAATACTCTTGCTTCTGATTATCCAAGAGAAAGTGATGGGGCCTGCTTACAGATGCGATTGTCTTATAGTCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGACTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAGTTCTCATATACAAGGTATATGAGGATGGGAAGACAACCATGTCGATTTATGAGAGAAAAGCCAGTCTGAAGGATTTCTATGGTGTGATCTTTCCCTCTTTACTTCAACTCCACAGAGGAATCACTGATGTAGAAGAAAGAAAACAGAAGCAGTTATGTGCTACAAAGTACATGCCCAAAGATGTAAGAAAAGGAAAACTATCTGAAATGGATATTGAGAGAGAAGAAGAATGCGGTATTTGCATGGAGATGAACAACAAGGTTGTCTTGCCCAATTGCAACCACACGTTGTGTATAAAATGCTACAGGAAATGGCATTCAAGATCTCAATCTTGCCCTTTCTGTCGGAACAGTCTTCAAAGAGTAAATTCTGGTGACCTTTGGATCTACTTGAACAACAATGAGATAAATGACTTGGCTTCAATCAACAAGGAGAATCTAAAAAGACTATTTACGTTCGTTGACAAGTTGCCTCTGATTTTATCAGATCCTTCACTTATGTCTTATCCTCAGCGCTAA 720 0.4014 MRKSFKDSLKALEADILFANTLASDYPRESDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRVLIYKVYEDGKTTMSIYERKASLKDFYGVIFPSLLQLHRGITDVEERKQKQLCATKYMPKDVRKGKLSEMDIEREEECGICMEMNNKVVLPNCNHTLCIKCYRKWHSRSQSCPFCRNSLQRVNSGDLWIYLNNNEINDLASINKENLKRLFTFVDKLPLILSDPSLMSYPQR* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0022 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE AIRP2 1 238 - -
Pvu10g0022 239 ProSiteProfiles Zinc finger RING-type profile. 145 183 IPR001841 -
Pvu10g0022 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 217 IPR013083 -
Pvu10g0022 239 SUPERFAMILY RING/U-box 125 188 - -
Pvu10g0022 239 SMART ring_2 145 182 IPR001841 -
Pvu10g0022 239 Pfam Zinc finger, C3HC4 type (RING finger) 142 189 - -
Pvu10g0022 239 ProSitePatterns Zinc finger RING-type signature. 160 169 IPR017907 -
Pvu10g0022 239 PANTHER RING FINGER PROTEIN 41, 151 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0022 Pvu-Chr10 536750 541026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0022 94 183 C3H Transcription Factor Family AT5G01960 33.333 5.11e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0022 K25840 - pop:7466068 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1080 8 11970519 11973727 Pvu10g0022 10 536750 541026 PCT