Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0020 ATGAAGAATGCCAAGGGCAAGGGAGCAGCAAAGGTCTCAAAAGAAGCACTGAAGCCTGTTGATGACAGAAAGATTGGAAAGAGGAAGGCTCCTAGTAAGCCTGACAAGGGCAGTGCACCAAAGGCAAAGAAGGAGAAGGCCAAGAAAGACCCCAACAAGCCTAAAAGACCACCCAGTGCTTTCTTCGTGTTCCTTGAGGAGTTCAGGAAGACCTTTAAGGCTGAGAATCCTAATGTGAAGGCTGTGTCTGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCCTATCCAGTGCTGAAAAAGCTCCATATGAAGCCAAGGCAGCAAAAAGGAAAGTCGAGTATGAAAAACTTATGAAAGCTTATGATAAAAAGCAGGCAAGCTCCGCAGATGATGATGAATCAGACAAGTCCAAATCTGAAGTGAATGATGAAGATGATGAAGCCAGTGCAGAGGACCATCAAGAGGAGGATGAGGAAGAGGATGATGATGATGAGGAAGATGAGGATGATGACTGA 519 0.4566 MKNAKGKGAAKVSKEALKPVDDRKIGKRKAPSKPDKGSAPKAKKEKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSAVGKAGGEKWKSLSSAEKAPYEAKAAKRKVEYEKLMKAYDKKQASSADDDESDKSKSEVNDEDDEASAEDHQEEDEEEDDDDEEDEDDD* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0020 172 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 54 123 IPR009071 -
Pvu10g0020 172 MobiDBLite consensus disorder prediction 104 137 - -
Pvu10g0020 172 SUPERFAMILY HMG-box 39 123 IPR036910 -
Pvu10g0020 172 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 1 163 - -
Pvu10g0020 172 MobiDBLite consensus disorder prediction 86 172 - -
Pvu10g0020 172 Gene3D High mobility group box domain 37 139 IPR036910 -
Pvu10g0020 172 SMART hmgende2 53 124 IPR009071 -
Pvu10g0020 172 MobiDBLite consensus disorder prediction 8 55 - -
Pvu10g0020 172 CDD HMGB-UBF_HMG-box 54 120 - -
Pvu10g0020 172 MobiDBLite consensus disorder prediction 1 58 - -
Pvu10g0020 172 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 163 IPR031061 -
Pvu10g0020 172 Pfam HMG (high mobility group) box 54 122 IPR009071 -
Pvu10g0020 172 MobiDBLite consensus disorder prediction 138 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0020 Pvu-Chr10 522151 525152 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pvu10g0020 HMG_box 2e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0020 K25507 - gmx:100499704 186.422