Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0007 ATGGGCGTGGACTATTACAAACTTCTTCAGGTAGATCGAAGTGCTAGCGATGAGGATCTCAAGAAAGCTTATCGCAGGCTTGCTATGAAGTGGCACCCTGATAAGAACCCTAACAGTAAAAAGGAAGCTGAAGCCAACTTCAAGCAAATCTCGGAAGCCTATGATGTTTTGAGTGATCCACAAAAGAGGGCAGTGTATGATCAGTATGGTGAGGAGGGATTGAAAGGGCAGATGCCACCACCGGGTGCTGGTGGATTTTCAGGTGGCAATGACAGTGGAGCAACGACTTTCTGGTTCAACCCTAGAAGTGCAGATGATATATTTTCTGAGTTCTTTGGGTTTTCAAGTCCCTTTGGAATGGGGGATATGGGTGGCCGTGCCGGTCCGTCTGGCTTTCCCAGATTTGGGGATGACATTTTTACTTCTTTTAGTAGGAATGCGACTGGAGAAGGCTCTGGCCATATGCCAAGGAAAAGTGCACCTATTGAGAGAACATTGCAATGCAGTTTGGAGGATTTATACAAAGGGACTACCAAAAAAATGAAGATTTCCAGGGATGTGATTGATGCTAGTGGGAGGCCCACCACTGTAGAGGAAATTCTAACCATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCAGAGAAGGGAAACGAACAAAGAGGAGTTATACCAGCTGATCTTGTTTTTATTATTGATGAAAAACCTCATGGTGTCTTCAAAAGGGATGGCAATGATCTTGTTGTCACACAGAAAATATCCCTTGTCGAAGCTCTGACTGGTTATGCCGGACAGCTGACATTGCTTGATGGTCGGAATCTTACCGTAACCACCAACTCCATCCTTAGTCCGACATACGAAGAAGTGATCAAAGGAGAGGGTATGCCCATTCCCAAGGAACCTTCCAAAAGGGGAAACTTGAGGATCAAGTTTAATATCAAGTTCCCCTCTAGACTTACATCAGAGCAGAAAACTGGCATTAAACGATTGTTGACATCACCATAA 1017 0.4435 MGVDYYKLLQVDRSASDEDLKKAYRRLAMKWHPDKNPNSKKEAEANFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQMPPPGAGGFSGGNDSGATTFWFNPRSADDIFSEFFGFSSPFGMGDMGGRAGPSGFPRFGDDIFTSFSRNATGEGSGHMPRKSAPIERTLQCSLEDLYKGTTKKMKISRDVIDASGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHGVFKRDGNDLVVTQKISLVEALTGYAGQLTLLDGRNLTVTTNSILSPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSRLTSEQKTGIKRLLTSP* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0007 338 Gene3D - 161 239 - -
Pvu10g0007 338 SMART dnaj_3 3 62 IPR001623 -
Pvu10g0007 338 CDD DnaJ 4 59 IPR001623 -
Pvu10g0007 338 Pfam DnaJ domain 4 67 IPR001623 -
Pvu10g0007 338 SUPERFAMILY Chaperone J-domain 3 97 IPR036869 -
Pvu10g0007 338 Pfam DnaJ C terminal domain 162 320 IPR002939 -
Pvu10g0007 338 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Pvu10g0007 338 Gene3D - 241 321 - -
Pvu10g0007 338 CDD DnaJ_C 160 323 - -
Pvu10g0007 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 243 329 IPR008971 GO:0006457|GO:0051082
Pvu10g0007 338 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 337 - -
Pvu10g0007 338 PRINTS DnaJ domain signature 6 24 IPR001623 -
Pvu10g0007 338 PRINTS DnaJ domain signature 24 39 IPR001623 -
Pvu10g0007 338 PRINTS DnaJ domain signature 42 62 IPR001623 -
Pvu10g0007 338 PRINTS DnaJ domain signature 62 81 IPR001623 -
Pvu10g0007 338 PANTHER BNAANNG28460D PROTEIN 1 337 - -
Pvu10g0007 338 Gene3D DnaJ domain 3 124 IPR036869 -
Pvu10g0007 338 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Pvu10g0007 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 241 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0007 Pvu-Chr10 385574 389675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0007 5 69 C2H2 Transcription Factor Family AT1G74250 40.580 3.90e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0007 K09510 - gmx:100777607 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1061 8 11584233 11586660 Pvu10g0007 10 385574 389675 PCT