Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0006 ATGGCTTCAACTCCCCGCACCGTCGAAGAGATCTTCAAGGATTACACCGCTCGGAGAACCGCCATCGTTCGCGCTCTCTCTCAAGATGTCGATGAATTCTACGGACTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGACATCCAAATGAGACTTGGGAGGTGACTTTGCCAGCGGAGGAAGTTCCGCCCGAGCTTCCGGAGCCTGCACTCGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGCTCCTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAGCGTTTGTTTGGCTTGATAAATGATCTTCCTACTGTTTTTGAAGTTGTGAGTGAGAGGAAGCCAGTAAAGGACAAGCCCACTGCAGACAGTGGAAGCAAATCTAAGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCAGATGAAGGTTTTGCAGAGGAGGATGACGAGCATAGTGAAACCCTGTGTGGGAGCTGTGGCGGAAATTACAATGCAGATGAATTTTGGATTGGTTGTGACATATGTGAGAGGTGGTTCCATGGTAAATGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGTCCATCATGCAGCTTGAGGCGGGGAAGGCCCTAA 714 0.4846 MASTPRTVEEIFKDYTARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFGLINDLPTVFEVVSERKPVKDKPTADSGSKSKGSTKRSSDGQVKSNPKFADEGFAEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0006 237 MobiDBLite consensus disorder prediction 146 163 - -
Pvu10g0006 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 231 IPR013083 -
Pvu10g0006 237 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Pvu10g0006 237 SMART PHD_3 183 231 IPR001965 -
Pvu10g0006 237 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Pvu10g0006 237 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 2 236 - -
Pvu10g0006 237 Pfam PHD-finger 184 231 IPR019787 -
Pvu10g0006 237 PANTHER CPG BINDING PROTEIN 2 236 IPR045104 GO:0006355|GO:0042393
Pvu10g0006 237 CDD PHD_AL_plant 183 233 IPR044104 -
Pvu10g0006 237 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Pvu10g0006 237 SUPERFAMILY FYVE/PHD zinc finger 174 235 IPR011011 -
Pvu10g0006 237 MobiDBLite consensus disorder prediction 135 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0006 Pvu-Chr10 376690 379801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0006 2 236 Alfin-like Transcription Factor Family AT5G05610 75.847 3.43e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pvu10g0006 Alfin 2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0006 - - gmx:100793126 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1060 8 11575689 11579032 Pvu10g0006 10 376690 379801 PCT