Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0003 ATGGAGGGTCATCATCTCCATCGCCACCATGGGCAACAACAACAAAGGCTTCAGCCTCAGAATACGAGTGCCAACGTGGATGTGACTGATAGGTTTCCCCAATGGAGCATCCAAGAGACTAAGGAGTTTCTCGTGATTCGTGCAGAGCTGGATCAGACTTTCATGGAGACTAAGAGGAACAAGCAGTTGTGGGAAGTGATCTCAACAAGAATGAAGGAAAAGGGTTACCATAGAAGTGCAGAGCAGTGCAAGTGCAAGTGGAAAAACCTTGTTACTCGCTACAAGGGGTTTGAAACAATGGAGCAAGAAGCTACGAGGCAGCAATTCCCATTTTACAATGAATTCAATGCGATTTTCACAGCAAGGATGCAGAGAATGCTGTGGGCTGAAGCTGAGGGTGGATCGAAGAAGAACAAGGGGACGCAGCTCTCATCGGATGAAGAAGAAGATGGCAATGAAGAGAGTGCAGAAGCTGGTGGGGGAAGAAAGAAGAAAAAGGCAAAGATAGCTAGTGGGGGTGGTGGTGGTAGCAGCAGTTTGAACAGTTTGAAGGAGATTTTGGAGGAGTTCATGAGGCAACAGATGCAGATAGAAGCACAGTGGATGGAAGCGTTTGAGGCAAGGGAAAATGAGAGGAGGTTGAAGGAGATGGAGTGGAGGCAAGCCATGGAGGTGTTGGAGAATGAGAGGATAATGATGGAAGAAAGATGGAGAGAAAGGGAGGAACAAAGGAGGATTAGAGAAGAAGCTAGGGCTGAGAAGAGGGATGCTCTAATCACAGCTTTGCTAAACAAGCTAGAGAGACAAGAAATGTGA 816 0.4706 MEGHHLHRHHGQQQQRLQPQNTSANVDVTDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISTRMKEKGYHRSAEQCKCKWKNLVTRYKGFETMEQEATRQQFPFYNEFNAIFTARMQRMLWAEAEGGSKKNKGTQLSSDEEEDGNEESAEAGGGRKKKKAKIASGGGGGSSSLNSLKEILEEFMRQQMQIEAQWMEAFEARENERRLKEMEWRQAMEVLENERIMMEERWREREEQRRIREEARAEKRDALITALLNKLERQEM* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0003 271 PANTHER - 1 270 - -
Pvu10g0003 271 Coils Coil 180 200 - -
Pvu10g0003 271 CDD GT1 33 96 - -
Pvu10g0003 271 MobiDBLite consensus disorder prediction 132 180 - -
Pvu10g0003 271 Pfam Myb/SANT-like DNA-binding domain 34 118 IPR044822 -
Pvu10g0003 271 Gene3D - 35 96 - -
Pvu10g0003 271 ProSiteProfiles Myb-like domain profile. 35 91 IPR001005 -
Pvu10g0003 271 MobiDBLite consensus disorder prediction 1 22 - -
Pvu10g0003 271 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0003 Pvu-Chr10 72496 74257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0003 30 268 Trihelix Transcription Factor Family AT5G01380 53.759 2.24e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pvu10g0003 Myb_DNA-bind_4 8.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0003 - - gmx:100818384 365.155