Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02602 ATGGAGATATCTTTGTTAAAGGTGCTATCTGATGCGATATCCTCATTTTCGCATTTATCATTTTCTGAAAAAATGAAGTCAGAACCTGTATCAAAGTATTACCAAAAGGCAGAGAAGATGCTTAAGTTGTTGAAGCCGATTATTGATACTATTGTTTTGTCAGATTTAGCTTCTAACGAAGTGCTTAGTAAGCTATTCGAGGAACTTGGTCTGGCTGTTGATGAGTTGAGGGAGCTTCTTCTGAACTGGCATCCATTATCTAGCAAATTTTATTTTGTTATTCAAGTTGATCCCTTGATATCAACAATTCAGGATTTGGGACTCAGCATTTTACAACAGCTGAAGGCTTCACCACAAAGTCTCTCTGATAATTTGGGAAATGAAACATCATCAACCATTAAAAAAGCTATTATGGAACAACTGGAAGGTGTAGGACCAAGTACAGAGGTCCTGGAAAACATTGCTGAGAGCCTGGGTCTAAGGTCTAATCAAGAGGTCCTGATTGAGGCTGTAGCGCTTGATAAGTTGAAGGAGAATGCTGAACAACTTGAAAATACTGCAGAAGCTGAATATATTGATCAAATGATCTCAGTTGTAAATCGTATGAATGAGCATCTTGTTATGCTTAAGCAAGCTCAGAGCTCTATCCCACTGTCAGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCAGTCATTGTGGCATCAGGGCAAACATATGAGCGGGCTTTCATCAAGAACTGGATTGACCTAGGGCTTACTGTTTGTCCAAAGACACACCAGACTCTGGTTCACACCAACCTAATACCTAACTACACTGTCAAGGCATTAATTGCTAACTGGTGTGAATCAAATGATGTGAAGCTTGTTGATCCCATCAAGTCCAAAAGGTTAAATCAACCATCTCCTTTTCATGGGTCTATAGAATCTGGTTTGACCAAGGATTCACCTGTTATAACTAGTGGTGAAATCCACCAAGAACGAACATCAACATTGCATCCCTCTTCAACTCCAGGTGGTTCCTTAAATGGCATGGTTAATGAGCAGCATGTGGATCTTGAAAGAATATCAATCACAGGTTCAGATGATGGGTCTGCCAGCTCAGATGAAGGGAGTGTGGATTCAGTTGGCCAATCATTAACGTCACCATCTAGAAGGGAATCCTCCCATGCCTTGACCTCAGAACAATCTCAAACTGGTGTTAGAACTACTTCTGATAACAACAATACTCCTCTGCTGTCAACCAGTTCAGTCCACAGTCCAGATGCTTCTGGGGAATTGAATTCAGGGCCAGATGCTGTTGCCATGCCAACTCGTCATAGGGAACCTGAGTTTTCACCCCAATTGGCGGTGCCAAGGTCTCGAAGCCTAAGTATATGGCAAAGGTCATCTGAGTGGCTTGTTCCTAGGGTAGTGTCTACTCCTATTGAAACAAGAGCTGATCTTTCTGCTGCTGAAACCCAGGTTCGGAAATTGGTGGAGCAGTTAAAGGGCGATTCTATCGATTCTAAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGCACAATATGGATAACCGAATTGTGATTTCAAATTGTGGAGCCATTAACTTATTAGTTGATTTACTTCAATCAACCGATACTATGATCCAGGAAAATTCTGTTACAGCACTCCTTAACTTATCAATCAATGATAACAACAAAGCTGCTATTGCAAATGCTGGTGCAATTGAACCTTTGATTCATGTCCTTCAGACAGGGAGTCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCCTCTCAGTGACCGAGGAAAACAAGATCAGGATAGGTAGATCTGGGGCAATTAGACCACTGGTCGATTTATTGGGGAACGGAACCCCTAGAGGGAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGATCGGATTGTGCAAGCCGGTGCTGTGAAACACCTTGTAGAGTTAATGGACCCGGCAGCCGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAATCTTGCTACAATACCAGAAGGGAAAACAGCAATTGGTCAGCAAGGTGGCATTCCTGTTTTGGTTGAAGTTATCGAGTTGGGTTCTGCAAGAGGAAAGGAGAACGCAGCAGCGGCTCTTCTACATCTATGCTCAGACAATCACAGATACTTAAACATGGTGCTCCAAGAAGGAGCTGTGCCCCCTTTAGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCCTGGCTCTCCTTAATCAATTTAGAAGCCAAAGACACGGTGCTGCTGGGAGAGCTTGA 2334 0.4297 MEISLLKVLSDAISSFSHLSFSEKMKSEPVSKYYQKAEKMLKLLKPIIDTIVLSDLASNEVLSKLFEELGLAVDELRELLLNWHPLSSKFYFVIQVDPLISTIQDLGLSILQQLKASPQSLSDNLGNETSSTIKKAIMEQLEGVGPSTEVLENIAESLGLRSNQEVLIEAVALDKLKENAEQLENTAEAEYIDQMISVVNRMNEHLVMLKQAQSSIPLSVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLVHTNLIPNYTVKALIANWCESNDVKLVDPIKSKRLNQPSPFHGSIESGLTKDSPVITSGEIHQERTSTLHPSSTPGGSLNGMVNEQHVDLERISITGSDDGSASSDEGSVDSVGQSLTSPSRRESSHALTSEQSQTGVRTTSDNNNTPLLSTSSVHSPDASGELNSGPDAVAMPTRHREPEFSPQLAVPRSRSLSIWQRSSEWLVPRVVSTPIETRADLSAAETQVRKLVEQLKGDSIDSKREATAELRLLAKHNMDNRIVISNCGAINLLVDLLQSTDTMIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLQTGSPEAKENSAATLFSLSVTEENKIRIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGKTAIGQQGGIPVLVEVIELGSARGKENAAAALLHLCSDNHRYLNMVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGAAGRA 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02602 777 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 534 576 IPR000225 GO:0005515
Pumo9g02602 777 MobiDBLite consensus disorder prediction 365 429 - -
Pumo9g02602 777 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 575 617 IPR000225 GO:0005515
Pumo9g02602 777 MobiDBLite consensus disorder prediction 364 457 - -
Pumo9g02602 777 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Pumo9g02602 777 FunFam RING-type E3 ubiquitin transferase 219 294 - -
Pumo9g02602 777 Gene3D - 476 774 IPR011989 -
Pumo9g02602 777 Coils Coil 166 193 - -
Pumo9g02602 777 Pfam Armadillo/beta-catenin-like repeat 564 603 IPR000225 GO:0005515
Pumo9g02602 777 Pfam Armadillo/beta-catenin-like repeat 648 684 IPR000225 GO:0005515
Pumo9g02602 777 Pfam Armadillo/beta-catenin-like repeat 525 562 IPR000225 GO:0005515
Pumo9g02602 777 Pfam Armadillo/beta-catenin-like repeat 606 644 IPR000225 GO:0005515
Pumo9g02602 777 MobiDBLite consensus disorder prediction 301 350 - -
Pumo9g02602 777 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Pumo9g02602 777 MobiDBLite consensus disorder prediction 305 349 - -
Pumo9g02602 777 FunFam RING-type E3 ubiquitin transferase 478 772 - -
Pumo9g02602 777 SUPERFAMILY ARM repeat 494 766 IPR016024 -
Pumo9g02602 777 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 616 658 IPR000225 GO:0005515
Pumo9g02602 777 CDD RING-Ubox_PUB 221 273 IPR045210 -
Pumo9g02602 777 SMART arm_5 605 645 IPR000225 GO:0005515
Pumo9g02602 777 SMART arm_5 686 726 IPR000225 GO:0005515
Pumo9g02602 777 SMART arm_5 646 685 IPR000225 GO:0005515
Pumo9g02602 777 SMART arm_5 727 768 IPR000225 GO:0005515
Pumo9g02602 777 SMART arm_5 564 604 IPR000225 GO:0005515
Pumo9g02602 777 SMART arm_5 523 563 IPR000225 GO:0005515
Pumo9g02602 777 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 657 698 IPR000225 GO:0005515
Pumo9g02602 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 294 IPR013083 -
Pumo9g02602 777 SUPERFAMILY RING/U-box 210 297 - -
Pumo9g02602 777 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Pumo9g02602 777 PANTHER U BOX DOMAIN-CONTAINING 29 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02602 Pumo-Chr9 61935553 61942509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02602 180 777 U-box Gene Family AT2G23140 60.972 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02602 - - gmx:100777715 1331.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00568 1 8852315 8858564 Pumo9g02602 9 61935553 61942509 PCT