Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02598 ATGAGAAGTCTTTTGCTTCAACTAGCTAGCCATCAAATAGAATTGCTGGCCCGAAAGGTTTTTGCACACAGCAGGGATCGAACACAGAATTTTCCGTTAAATAGATTGTTCTCACAACATATGAGCGTAAGATGTCTAAACACTACATCAACCCATCGGGTTATAGAATACTCAGTTCTCAGTTCAAGCACAAGGTTTGCATGTGAGAGAGGACTTGTTTCCCTGCCTTTTCTCTCCTTGTTTGTGTCTGTGTATGAAACAAAATCTTTCCCCCCTCTCAACCCACCACTTAGATCAAGACAATCAAAAGGCATGTTTGGACATCCAGAGACAGATAGATTAGATGAGATAACAAAGGTGAGAGCAGAGGGAGAAGCATCTTCTCAAATGGGAAGGAAGCATTTCTATGGTCCAACTCCTGGGACAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTCTCTCCTTATTTTTCACCACATGAGCCTCAAAAGTTTGCAGCAGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTAATGGAGGTACCAGAGGGCCAAAGAGCTGATGCAGCAAATAGCCTTGTTTATGAAGCTAACTTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATATCAGCTTTGCAGCAACAAGTTCAAACTTTACAAGCAGAACTAAATGCAATAAGGACAGAGATACTAAAATACAAATATAGAGAGGCTGCAAGTATCATTTCTTCTCATCATGTTGCTTTGGTTTCTTCTGCTGATGCAATATCAACAGCAATTAATCCTGCAGACTCACAAGGTCTTTCTCAACCTCCTCCTCCTCCTCCACCTCAACCAAAACCATTACCTTCTCCTCCTCCACCAAAACCATTACCTTCTCCTTCTGTCATCCTTTCATCCTTGTCTTCATCTTCAGCTTCTTCTGTGTACACTCCTCCTAAAAGCACAATGAGCCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG 1056 0.4242 MRSLLLQLASHQIELLARKVFAHSRDRTQNFPLNRLFSQHMSVRCLNTTSTHRVIEYSVLSSSTRFACERGLVSLPFLSLFVSVYETKSFPPLNPPLRSRQSKGMFGHPETDRLDEITKVRAEGEASSQMGRKHFYGPTPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQTLQAELNAIRTEILKYKYREAASIISSHHVALVSSADAISTAINPADSQGLSQPPPPPPPQPKPLPSPPPPKPLPSPSVILSSLSSSSASSVYTPPKSTMSLGSISSTENVPYFV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02598 351 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 145 300 - -
Pumo9g02598 351 MobiDBLite consensus disorder prediction 281 351 - -
Pumo9g02598 351 Coils Coil 228 248 - -
Pumo9g02598 351 ProSiteProfiles LOB domain profile. 148 249 IPR004883 -
Pumo9g02598 351 Pfam Lateral organ boundaries (LOB) domain 149 245 IPR004883 -
Pumo9g02598 351 MobiDBLite consensus disorder prediction 314 351 - -
Pumo9g02598 351 MobiDBLite consensus disorder prediction 286 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02598 Pumo-Chr9 61896452 61905556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02598 130 262 AS2 family AT2G30340 80.597 1.72e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo9g02598 LOB 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02598 - - ccaj:109795340 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02598 9 61896452 61905556 Pumo9g02598 9 61896452 61905556 ECH