LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo9g02596	ATGGAGAACACATCAAAGTCAAACATCTTGATGCAAAAATATGAATTAGGAAGGTTACTAGGCCAAGGCACGTTTGCAAAGGTTTACTATGCACGTAGTACAATCACTAACCAAAGCGTGGCTATTAAAGTGATTGACAAGGATAAGGTTATAAAAAATGATCAAGCTGATCATATTAAACGGGAAATATCTGTTATGAGACTGGTCAAGCATCCAAATATTATTGAGCTTTATGAGGTCATGGCCACCAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGAGAGTTGTTTAAGAAGGTGGCCAAAGGAAAGCTCAAAGAAGAAGTTGCACACAAATATTTTAGGCAGCTAGTGAATGCAGTGGATTTTTGTCACAGTAGAGGTGTATACCATAGAGACATAAAGCCAGAGAACATTCTGTTGGATGAAAATGAGAATTTGAAGGTCTCGGATTTCGGGTTAAGTGCCTTGGTTGAGTCCAAACGGCAAGATGGCTTGTTGCACACAACTTGTGGAACACCTGCCTATGTTGCTCCTGAGGTCATCAAAAGGAAAGGTTATGATGGTGCGAAAGCTGATATTTGGTCATGTGGGGTAGTTTTGTTTGTCTTACTGGCTGGTTACATTCCTTTTCATGACCCTAATTTGATGGAGATGTATAGGAAGATAAGCAAGGCAGAGTTTAAATGTCCTAGTTGGTTCCCGCGAGGAGTTCGGAGGCTGTTGAGCAAGATGTTGGATCCGAATCCAGAAACTAGGATTTCCATAGATGAGGTTAAGCAGTGTTCTTGGTTTAGGAAGGGGCCAAATGGTAGACAGAAAACACAAGAAGGGGAAAACATGAGTGTCTCTCCTTCAGTTACAAATCATTCTGAACAATGTGGTGATGAAAGTGACGGTTTAGCAGCAGAAGCAAGGGAAGAGTCAGTTGTGCCAGCAAGTATAAATGCCTTTGATATCATCTCCCTTTCACCTGGTTTCAATCTTTGTGGATTCTTTGAAGACAGTTTTCAGAAAAGGGAAGCTAGGTTTACTTCAAGACAACCGGCATCAGTCATCATCTCCAGGCTGGAAGAAATCGCGAAGCGGCTGAAGCTGAAAATAAAGAAAAGGGCTGCAGGTTTGTTGAAATTGGAGGGCCTTCATGAAGGTAGGAAGGGGACTTTATCCATTGATGCAGAGATCTTTGAGGTTACTCCACTTTTGCATTTAGTGGAGGTGAAAAAATCAAATGGAGATACATTGGAATATGAGAAAATATTGAAAGAGGACATAAGGCCTGCTCTTAAAGATATTGCTTGGGTTTGGCAAGGTGACCAACAAGAGCAATCACAACAGTTGGAGCAACAGCAGCAACAACAATCACAGTCATAA	1383	0.4107	MENTSKSNILMQKYELGRLLGQGTFAKVYYARSTITNQSVAIKVIDKDKVIKNDQADHIKREISVMRLVKHPNIIELYEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEEVAHKYFRQLVNAVDFCHSRGVYHRDIKPENILLDENENLKVSDFGLSALVESKRQDGLLHTTCGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYIPFHDPNLMEMYRKISKAEFKCPSWFPRGVRRLLSKMLDPNPETRISIDEVKQCSWFRKGPNGRQKTQEGENMSVSPSVTNHSEQCGDESDGLAAEAREESVVPASINAFDIISLSPGFNLCGFFEDSFQKREARFTSRQPASVIISRLEEIAKRLKLKIKKRAAGLLKLEGLHEGRKGTLSIDAEIFEVTPLLHLVEVKKSNGDTLEYEKILKEDIRPALKDIAWVWQGDQQEQSQQLEQQQQQQSQS	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo9g02596	460	SMART	serkin_6	14	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo9g02596	460	Pfam	Protein kinase domain	14	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo9g02596	460	SUPERFAMILY	Protein kinase-like (PK-like)	10	288	IPR011009	-
	Pumo9g02596	460	Gene3D	Kinase associated domain 1, KA1	318	438	-	-
	Pumo9g02596	460	Gene3D	Transferase(Phosphotransferase) domain 1	4	317	-	-
	Pumo9g02596	460	CDD	STKc_SnRK3	13	267	-	-
	Pumo9g02596	460	FunFam	Non-specific serine/threonine protein kinase	313	437	-	-
	Pumo9g02596	460	MobiDBLite	consensus disorder prediction	270	305	-	-
	Pumo9g02596	460	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	5	433	-	-
	Pumo9g02596	460	ProSiteProfiles	Protein kinase domain profile.	14	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo9g02596	460	Pfam	NAF domain	315	373	IPR004041	GO:0007165
	Pumo9g02596	460	MobiDBLite	consensus disorder prediction	271	298	-	-
	Pumo9g02596	460	ProSitePatterns	Protein kinases ATP-binding region signature.	20	43	IPR017441	GO:0005524
	Pumo9g02596	460	CDD	CIPK_C	319	433	-	-
	Pumo9g02596	460	ProSiteProfiles	NAF domain profile.	313	337	IPR018451	GO:0007165
	Pumo9g02596	460	FunFam	Non-specific serine/threonine protein kinase	4	293	-	-
	Pumo9g02596	460	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	132	144	IPR008271	GO:0004672\|GO:0006468
	Pumo9g02596	460	FunFam	Non-specific serine/threonine protein kinase	5	93	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo9g02596	Pumo-Chr9	61827333	61830410	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo9g02596	1	445	CBL-interacting serine-threonine protein kinases	AT5G58380	68.421	0.0	637

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Pumo9g02596		Pkinase	3.3e-77	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo9g02596	-		K07198	gmx:100779316	803.127