Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02585 ATGGCACCCCTAGTTGTTCTCATTTTTCTCTTTATAGAAATGCACTTCCAGGGTGCCACTGCTGACTATGGCGGTTGGCAGGGTGGCCATGCTACTTTCTATGGTGGTGGTGATGCTTCTGGCACAATGGGAGGTGCATGTGGCTATGGGAATTTGTACAGTCAGGGATATGGAACCAACACTGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTGAGTTGTGGGGCATGTTATGAAATGAGGTGTGCTAATGACCCAAGATGGTGCAAGCCTGGCACCATTGTTGTCACTGCTACAAACTTCTGTCCTCCAAACTTTGCTTTGGCCAACAATAATGGTGGTTGGTGCAACCCTCCTCTACAACACTTTGATATGGCAGAACCAGCCTTCCTTCAAATTGCTCAATATAGAGCTGGAATTGTGCCTGTGTCATTTAGAAGAGTGCCCTGTGTGAAAAAGGGGGGAATAAGGTTCACAATTAATGGCCACTCTTACTTCAACCTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATGTCCATGCAGTGTCCATCAAAGGGTCCAGAACTAGCTGGCAACCCATGTCAAGAAACTGGGGGCAAAATTGGCAGAGCAACTCTTACCTCAATGGACAAAGCCTCTCTTTTCAAGTCACCGCCAGTGACGGTAGAACCGTCACAAGCGTCAACGTGGCACCATCTAACTGGCAGTTCGGTCAGACCTTCCAAGGGGGTCAGTTTTAG 747 0.4859 MAPLVVLIFLFIEMHFQGATADYGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEMRCANDPRWCKPGTIVVTATNFCPPNFALANNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHAVSIKGSRTSWQPMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSVNVAPSNWQFGQTFQGGQF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02585 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Pumo9g02585 248 FunFam Expansin 14 152 - -
Pumo9g02585 248 FunFam Expansin 156 248 - -
Pumo9g02585 248 SMART dpbb_1 61 146 IPR007112 -
Pumo9g02585 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Pumo9g02585 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Pumo9g02585 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Pumo9g02585 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Pumo9g02585 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Pumo9g02585 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Pumo9g02585 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Pumo9g02585 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Pumo9g02585 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Pumo9g02585 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Pumo9g02585 248 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Pumo9g02585 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Pumo9g02585 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Pumo9g02585 248 Gene3D - 155 248 IPR036749 -
Pumo9g02585 248 Gene3D - 12 151 IPR036908 -
Pumo9g02585 248 PANTHER EXPANSIN-A15 5 248 IPR002963 GO:0009664
Pumo9g02585 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Pumo9g02585 248 CDD DPBB_EXPA_N 25 151 - -
Pumo9g02585 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Pumo9g02585 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Pumo9g02585 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Pumo9g02585 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Pumo9g02585 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Pumo9g02585 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02585 Pumo-Chr9 61687255 61689959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02585 7 248 Expansin Gene Family AT2G40610 82.716 2.10e-150 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02585 - - gmx:100816848 479.559