Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02582 ATGGAGGTTGAGACTGTCCACTGTGGATGCATAGTGTCCAGCTCTTTGTTTGAGTATCTAGATTATGGCGGCATAGGTTGTGTTAGCTGCGTTAAGGCTTACCAAATTCCTCTGATGCGGGATAATGAAAACACTATTGGGTCAGTTAGATCAATAAAAAACAATGCAAGTGATTGTCGTACTGAACATATCGATGGTAGATTATTGGTGGATGGTGCTGGCAAAGGAAACCTTATGCAGTTGAGTAGAACTGTTGAAGCTTGTGAATCCAGCCGTTGGCCTCAAGCTGGGAGAGATGCCATGGATTCATGTATTGGTCCAAACTGGCAAGAGGATAGAAGATTTTCAAATGTGATGAACCTGTCTAGTCATTCATTACCATTTACTACATTAGAGAATACTAGACCAACATGGGAGACACAAACTATGCACAAATCAAGTTCAGTGAATATTTCTCTGGGAACCTCATCAGGAAATTCTGTCCTGCCTTCTGCTTTAGACATTGTAGAAGGGAGACTTGAGGGTAAAGCATCGTTTTGTCCCTTTCATCAAGGGCAAAGATCTCTCTCCATATCTAAACCATTGTTGAATGAGATAGCCATGGATATGGAAGCAAGTAAAGGTTTGATTTCTCAGGCACGTGTTGCCCGGCCACCTGCTGATGGGAAAGGCAGGAATCTGTTACTTTCTCGATACTGGCCTAGGATTACTGATCAAGAGCTGGAGAAATTGTCCGGGGATTTGAAGTCTACTATAGTGCCATTGTTTGAGAAGGTATTGACTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAATCCTGCGCTGAGGCTTACTTTCCTCCTATTTCACAGTCAGAAGGTCTTCCTTTGCAGTTCAAAGATGTGAAGGGAAATGATTGGACATTTCAGTTCAGATTTTGGCCTAATAACAATAGTAGGATGTATGTATTGGAGGGAGTAACCCCTTGCATACAGGCCCTGCGATTAAATGCTGGTGATATTGTAACATTTAGTCGAATAGATCCTGGAGGCAAATTTGTAATGGGTTTCAGAAGGACATCAGATTCTATAGATACACAGGATGCCTCTACTTTTGCTCATTCCAATGATTTTTCAACAAGGGAAACAACCTTTTCTGGTGCAACTGCAAATCTGCACTCAGGAAATAGTTATCCTGATCTTCTCCAGACAAGGAAAGGGAATGGCGAACCGTACTTAAACGGATGTTCAGAACATTTGCGTTTCAGTACTGGAACTGCTGACTGTCTCCAAACTGAAAATTGTGAGGTGGTAAACAATGATTTGTTGCAGCAACCAATTTCAGTTTCAGAGAAGACTCAAGATATTGCACCTAAGAGTAAGAGGTTGCTCACACATAATGAAGATGCAGTGGAGTTGAGAGTTACATGGGAAGAAGCACAGGACTTGCTTCGTCCACCACCTAGTGTCAAGCCAAGTATTGAAACAATTGAGGAGAACGAATTTGAGGAATATGTGGTAATTTTATTTCAAATGTTTGGGGTGCTAGCAGGTGAACTTTATTTTGTGTTTTTAGACCTTGATGGTAGTAAATGTATGGTCTACGGTTCTTATTATGGACAATGGCTTTTCAGGTCTTTGAGCTCTGCATCAGAGGAAATGAGTCTAAGGGAATTAGAAAATATTCCAGTAACCAGCAAAGATTCTAAAAAGCGAAGAATTGTAGAAAAACCTGAGTCAATCCAAGAACATGATGAGTCTTTTGGCTTAGATGCACTAGCCAGTACTGCAGCAATTTTGGATGATGATCTTGTTGACCCTGCTGATTCATCCACTGGTGCCACAACCAAGCATCCAAGGCACCGTTCTGGATGCACTTGTATTGTATGCATTCAGCCCCCAAGTGGAAAAGCAAGACACAGGGCAACATGCACTTGCCTTGCTTGCACGACGGTGAGGCGCGGGTTCAAGACCGTCATGATGCGTAAGAAGCAACGCCTATCAGATCGCGAAGCAGATGCAATAGCCCAGATTCATCACAGGGATGAGGGAGACGCCAATGGTGGTGCATCATCAAGAGATGGTACAAGTAACTTGGAGAAAGAAGGAAGCATAAGCAGAGGTGGTCTTATGATGGATGAACTCAGTGCAGGACCATTAGACCTGAATAGTCATCCCAATCATGAAGACATGCATGTTGATATGTGA 2196 0.4276 MEVETVHCGCIVSSSLFEYLDYGGIGCVSCVKAYQIPLMRDNENTIGSVRSIKNNASDCRTEHIDGRLLVDGAGKGNLMQLSRTVEACESSRWPQAGRDAMDSCIGPNWQEDRRFSNVMNLSSHSLPFTTLENTRPTWETQTMHKSSSVNISLGTSSGNSVLPSALDIVEGRLEGKASFCPFHQGQRSLSISKPLLNEIAMDMEASKGLISQARVARPPADGKGRNLLLSRYWPRITDQELEKLSGDLKSTIVPLFEKVLTASDAGRIGRLVLPKSCAEAYFPPISQSEGLPLQFKDVKGNDWTFQFRFWPNNNSRMYVLEGVTPCIQALRLNAGDIVTFSRIDPGGKFVMGFRRTSDSIDTQDASTFAHSNDFSTRETTFSGATANLHSGNSYPDLLQTRKGNGEPYLNGCSEHLRFSTGTADCLQTENCEVVNNDLLQQPISVSEKTQDIAPKSKRLLTHNEDAVELRVTWEEAQDLLRPPPSVKPSIETIEENEFEEYVVILFQMFGVLAGELYFVFLDLDGSKCMVYGSYYGQWLFRSLSSASEEMSLRELENIPVTSKDSKKRRIVEKPESIQEHDESFGLDALASTAAILDDDLVDPADSSTGATTKHPRHRSGCTCIVCIQPPSGKARHRATCTCLACTTVRRGFKTVMMRKKQRLSDREADAIAQIHHRDEGDANGGASSRDGTSNLEKEGSISRGGLMMDELSAGPLDLNSHPNHEDMHVDM 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02582 731 CDD B3_DNA 254 355 IPR003340 GO:0003677
Pumo9g02582 731 Pfam B3 DNA binding domain 256 355 IPR003340 GO:0003677
Pumo9g02582 731 FunFam B3 domain-containing transcription repressor VAL1 234 361 - -
Pumo9g02582 731 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 5 501 - -
Pumo9g02582 731 SMART B3_2 256 357 IPR003340 GO:0003677
Pumo9g02582 731 ProSiteProfiles B3 DNA-binding domain profile. 256 357 IPR003340 GO:0003677
Pumo9g02582 731 SUPERFAMILY DNA-binding pseudobarrel domain 253 357 IPR015300 -
Pumo9g02582 731 Gene3D - 234 360 IPR015300 -
Pumo9g02582 731 MobiDBLite consensus disorder prediction 675 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02582 Pumo-Chr9 61635678 61643391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02582 6 729 B3 DNA Binding Superfamily AT2G30470 40.508 8.03e-148 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo9g02582 B3 1.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02582 K09287 - gmx:100782543 998.808