Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02576 ATGTCCGTACACTCAACACTTAAGCTCCACCCCATGAACCTAGCAACCCCAAGTTCCCATTTTGACGACGACCCACCATGCAAAACCAAGGCCAAAACCCAAAGGAGGCTCCTTCGGATCATAATCACCGACCACGACGCCACCGATTCTGACTCCTCCGACGAAGAACAACAACAAAACAACCCAACAACAACAAGAAGAGTGAAGAGAGAAATCACCCGAATCAACATGCAACTTCCGCTCTCACATAACAATTTCCTTTCCTCTTCATCTTCTTATTACTCTTCAGCTTCTGCTTCCACTACCACTTCTTGTTCCTCTGAACAAAACCTAAAGTGTAAGAGACCCAAAAAACCGCCACCGTCCTCCGCCGTGGTCCGCCGCCGCAACAAGTTCCGCGGCGTCCGGCAGCGGCCGTGGGGGCGGTGGGCCGCCGAGATCCGCGACCCCACCAGCCGGAAACGCCTCTGGCTCGGTACCTTCGACACGGCGGAGGAAGCCGCCACGGAGTACGACAAAGCCGCCGTCAAATTCAAGGGCCCCAACGCCGTCACCAACTTCCCCCTCACGGCGCCGCCGCCGTCGCAGGCGGAGTCTCCGCCCTTCGCGGTCGACAGCCTCAGCACCGACGGCGGCGCGTCGTACTCCGACTTGGTGGCCTCGCCGACGTCCGTTCTCGCCTACGAGTGCGACTCGACGCCGTTCGACGGTTTCCGTTACCTCGACGAGGACGCGGTCGGGTTCCACATCGACGCGCCGTTAAGTTTGCCGGACGTTAACGTCGCGCTGACGTGTCACCACGGGAAGAAGAAGGAGGAGGAGGCGTTCGATGAATTCGATCTCGACGAGTTCATGACGTGGCCTTACTGA 870 0.5839 MSVHSTLKLHPMNLATPSSHFDDDPPCKTKAKTQRRLLRIIITDHDATDSDSSDEEQQQNNPTTTRRVKREITRINMQLPLSHNNFLSSSSSYYSSASASTTTSCSSEQNLKCKRPKKPPPSSAVVRRRNKFRGVRQRPWGRWAAEIRDPTSRKRLWLGTFDTAEEAATEYDKAAVKFKGPNAVTNFPLTAPPPSQAESPPFAVDSLSTDGGASYSDLVASPTSVLAYECDSTPFDGFRYLDEDAVGFHIDAPLSLPDVNVALTCHHGKKKEEEAFDEFDLDEFMTWPY 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02576 289 Pfam AP2 domain 131 180 IPR001471 GO:0003700|GO:0006355
Pumo9g02576 289 Gene3D AP2/ERF domain 130 190 IPR036955 GO:0003700|GO:0006355
Pumo9g02576 289 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Pumo9g02576 289 PRINTS Ethylene responsive element binding protein signature 154 170 IPR001471 GO:0003700|GO:0006355
Pumo9g02576 289 SMART rav1_2 131 194 IPR001471 GO:0003700|GO:0006355
Pumo9g02576 289 FunFam Ethylene-responsive transcription factor 2 130 189 - -
Pumo9g02576 289 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 200 - -
Pumo9g02576 289 CDD AP2 131 188 IPR001471 GO:0003700|GO:0006355
Pumo9g02576 289 MobiDBLite consensus disorder prediction 1 31 - -
Pumo9g02576 289 PIRSF PTI6 7 289 IPR017392 GO:0003700
Pumo9g02576 289 ProSiteProfiles AP2/ERF domain profile. 131 188 IPR001471 GO:0003700|GO:0006355
Pumo9g02576 289 MobiDBLite consensus disorder prediction 98 131 - -
Pumo9g02576 289 MobiDBLite consensus disorder prediction 44 70 - -
Pumo9g02576 289 SUPERFAMILY DNA-binding domain 131 189 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02576 Pumo-Chr9 61535891 61536760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02576 28 230 AP2-EREBP Transcription Factor Family AT4G27950 43.902 4.30e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo9g02576 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02576 K13434 - gmx:100800489 418.698