Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02540 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACCGCAGGGACTCGTGTGGTTTATTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGTCACATACCCAATTACCCGAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACATTACAGCCATTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAGTTGGGAATTCCAAGTAAGCAGCCCTCGAATTATTTTTGCAAGACGTTAACGGCAAGTGACACCAGCACACATGGAGGATTTTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCGCCTGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGGGGTAAGCCAAAACGACACCTTCTTACGACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTAGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGAGCCAATCGGCCACAAACTGTCATGCCATCCTCAGTTCTATCCAGTGATAGCATGCACATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCCGCAACTAATAGCTGCTTTACAGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCGCTTTCAAAATATATCAAAGCTGTGTACCATACGCGCGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGACCTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGGTCTGTTAAGGTTGGTTGGGATGAATCAACAGCAGGTGAGAGACAGCCACGGGTATCATTATGGGAAATTGAGCCTTTAACAACATTTCCAATGTATCCATCACTATTTCCCCTCAGATTGAAACGGCCATGGCATCCTGGCACCTCTTCTTTTCATGATGGCAGAGATGAAGCAACTAACGGGCTAATGTGGCTGAGGGGTGGACCTGGAGACCAAGCTCTCAATTCCCTGAATTTTCAAGGTTCTGGTTTGTTGCCATGGATGCAGCAGAGAGTGGATCCAACTTTGCTGGGAAATGATCATAATCAGCAGTACCAAGCCATGTTTGCATCTGGTTTGCAGAACTTAGGGAGTGGAGATCTAATGAGACAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTCCTTTGCAGCTGCAGCAACCGCAAGTAATTCAGCAATCCGTATCTTCTAATAATATCCTACAGCCACAAGCCCAAGTATTGGCAGAGAACTTGTCTCAGCACCTCCTTCAGAAATCACACAACAATCGAGAAGACCAAACACAGCAGCAGCACACTTATCAAGATACGGTTTTACTTCAAAGTGATCAGCTCCATCAGAGGCAACACTCCGGTTTACCTTCACCATCATATTCAAAATCAGATTTCTTAGATTCAAGCATGAAGTTCCCTGCTTCAGTTTCACCAGGACAAAACATGCTTAGTTCACTTTGTCCTGAAGGGAGTGGCAATCTCTTGAATTTATCCAGAAGTGGTCAGTCCATGCTGACTGAACAGTTACCTCAACAATCATGGGCCCCAAAGTTCACACCATTGCAGGTTAATGCTTTCGGCAACTCAGTGCCGCATGTGCAGTATTCTGGAAAAGATACTGCAATGGTACCACCACATTGTAACTCGGACACCCAAAACCCTATTCTATTTGGTGTCAACATCGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATACTACCGCATCAGCTGATACTGATGCATCAGCAATGCCATTAGGAGAGTCTGGATTCCAGGCTCCTCTATATCCTTGCGTGCAAGATTCACCAGAGTTGTTGCAAAGTGCAGGACAAGTTGACCCTCAAAACCAGACACGAACATTTGTCAAGGTTTACAAATCAGGGTCGGTAGGGCGCTCACTTGACATCTCCCGGTTCAGCAGTTATCATGAGCTGCGGGAGGAGTTGGCGCAGATGTTTGGTATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTACATCAAAATACTTTCACCTGAAGATATCCAGAAAATGGGAGAACAAGCCGTGGAATCCCTTGGTCCAAGTTCAGGACAGAGGCTGAATAGCACTGGTGCAGATTCTCATGAAATTGTTTCTGGACTTCCATCAATAGGCTCCCTTGAATACTGA 2532 0.4581 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGKPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLMWLRGGPGDQALNSLNFQGSGLLPWMQQRVDPTLLGNDHNQQYQAMFASGLQNLGSGDLMRQQMMNFQQPFNYLQQSGNPNPPLQLQQPQVIQQSVSSNNILQPQAQVLAENLSQHLLQKSHNNREDQTQQQHTYQDTVLLQSDQLHQRQHSGLPSPSYSKSDFLDSSMKFPASVSPGQNMLSSLCPEGSGNLLNLSRSGQSMLTEQLPQQSWAPKFTPLQVNAFGNSVPHVQYSGKDTAMVPPHCNSDTQNPILFGVNIDSSGLLLPTTVPRYTTASADTDASAMPLGESGFQAPLYPCVQDSPELLQSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPSSGQRLNSTGADSHEIVSGLPSIGSLEY 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02540 843 FunFam Auxin response factor 292 364 - -
Pumo9g02540 843 FunFam Auxin response factor 712 806 - -
Pumo9g02540 843 SUPERFAMILY CAD & PB1 domains 715 791 - -
Pumo9g02540 843 FunFam Auxin response factor 126 230 - -
Pumo9g02540 843 Gene3D - 292 364 - -
Pumo9g02540 843 Gene3D - 713 806 - -
Pumo9g02540 843 MobiDBLite consensus disorder prediction 810 829 - -
Pumo9g02540 843 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Pumo9g02540 843 MobiDBLite consensus disorder prediction 542 561 - -
Pumo9g02540 843 Gene3D - 126 229 IPR015300 -
Pumo9g02540 843 CDD B3_DNA 127 228 IPR003340 GO:0003677
Pumo9g02540 843 Pfam AUX/IAA family 713 801 IPR033389 -
Pumo9g02540 843 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Pumo9g02540 843 ProSiteProfiles PB1 domain profile. 717 801 IPR000270 GO:0005515
Pumo9g02540 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 806 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo9g02540 843 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Pumo9g02540 843 SMART B3_2 128 230 IPR003340 GO:0003677
Pumo9g02540 843 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02540 Pumo-Chr9 60239060 60249527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02540 98 814 B3 DNA Binding Superfamily AT5G37020 68.450 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo9g02540 AUX_IAA 8.9e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02540 - - gmx:100780393 1624.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02540 9 60239060 60249527 Pumo9g02540 9 60239060 60249527 ECH