Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02518 ATGGCACCTGTTTTGCCTCCCGGTTTCAGGTTCCACCCTACCGATGAAGAACTTGTTGCTTATTACCTTAATAGAAAGATCAATGGCCGAAAGATTGAGTTGGAGATCATACCTGAAGTTGATCTCTATAAGTGTGAACCTTGGGACTTGCCAGGGAAATCATTGTTACCGGGAAAGGATTTGGAGTGGTATTTCTTTAGTCCTCGTGATAGGAAGTACCCAAATGGATCAAGAACAAACCGTGCAACCGAAATCTGGATATTGGAAGGCCACAGGGAAGGATAG 285 0.4421 MAPVLPPGFRFHPTDEELVAYYLNRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATEIWILEGHREG 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02518 94 Pfam No apical meristem (NAM) protein 6 90 IPR003441 GO:0003677|GO:0006355
Pumo9g02518 94 Gene3D NAC domain 14 92 IPR036093 GO:0003677|GO:0006355
Pumo9g02518 94 SUPERFAMILY NAC domain 3 84 IPR036093 GO:0003677|GO:0006355
Pumo9g02518 94 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 84 - -
Pumo9g02518 94 ProSiteProfiles NAC domain profile. 5 94 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02518 Pumo-Chr9 59961453 59962740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02518 1 84 NAC Transcription Factor Family AT1G65910 89.412 1.56e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo9g02518 NAM 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02518 - - gmx:100809019 179.874