Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02514 ATGTTGCCACTGTCCATTCTCATTCTCCTCATCACACTCTCTTCGCCAGTCTCCTCTCACTACTCTTCTTCCACCTTCGAGTCCTCTCCCTCGTTCTCCGAGTGGCGATCCGCCCACGCCACCTACTACGCGGCGGCGGATCCCCGCGACGCGGTGGGAGGCGCGTGCGGGTACGGCGACCTGGTGAAGGGCGGGTACGGGATGGCGACGGTGGGGCTGAGCGAGGCGCTGTTCGAGCGCGGCCAGATCTGCGGCGCGTGCTTCGAGCTCCGGTGCGTGGAGGACATGCGCTGGTGCATCCCGGGCACCTCCATCATCGTCACCGCCACCAACTTCTGCGCCCCCAACTACGGCTTCACCAACGACGGCGGCGGACACTGCAACCCTCCCAACAAGCACTTCGTTCTCCCCATCGAAGCTTTCGAGAAGATCGCCATTTGGAAAGCCGGCAACATGCCCGTGCAGTATCGCAGGATAAAGTGTAGGAAGGAAGGAGGGATGCGATTTACGGTTACTGGTTCTGGAATCTTCATTTCGGTGCTGATCAGCAATGTTGCTGGCCACGGAGACATAATAGAGGTGAAGGTTAAAGGCTCGAGAACTGGTTGGCTTTCCATGGGTCGGAATTGGGGCCAAAATTGGCATGTAAATGCGTTACTGCAGAACCAACCTCTTTCGTTCGAGGTTAAAGCTAGTGATGGGAAAACGGTTACGTCTTACAATGTTGCTCCCAAGGATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTCGAGACTTGA 783 0.567 MLPLSILILLITLSSPVSSHYSSSTFESSPSFSEWRSAHATYYAAADPRDAVGGACGYGDLVKGGYGMATVGLSEALFERGQICGACFELRCVEDMRWCIPGTSIIVTATNFCAPNYGFTNDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGMRFTVTGSGIFISVLISNVAGHGDIIEVKVKGSRTGWLSMGRNWGQNWHVNALLQNQPLSFEVKASDGKTVTSYNVAPKDWTFGQTFEGKQFET 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02514 260 SMART dpbb_1 70 156 IPR007112 -
Pumo9g02514 260 Gene3D - 19 162 IPR036908 -
Pumo9g02514 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Pumo9g02514 260 Pfam Lytic transglycolase 71 156 IPR009009 -
Pumo9g02514 260 Gene3D - 166 258 IPR036749 -
Pumo9g02514 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Pumo9g02514 260 SUPERFAMILY Barwin-like endoglucanases 34 184 IPR036908 -
Pumo9g02514 260 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Pumo9g02514 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Pumo9g02514 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Pumo9g02514 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Pumo9g02514 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Pumo9g02514 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Pumo9g02514 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Pumo9g02514 260 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Pumo9g02514 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Pumo9g02514 260 PANTHER EXPANSIN-A15 27 258 IPR002963 GO:0009664
Pumo9g02514 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Pumo9g02514 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 166 IPR007112 -
Pumo9g02514 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Pumo9g02514 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Pumo9g02514 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Pumo9g02514 260 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Pumo9g02514 260 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Pumo9g02514 260 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Pumo9g02514 260 CDD DPBB_EXPA_N 34 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02514 Pumo-Chr9 59940995 59943041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02514 34 260 Expansin Gene Family AT3G03220 85.463 2.58e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02514 - - gmx:100809568 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02514 9 59940995 59943041 Pumo9g02514 9 59940995 59943041 ECH
Pumo1g00075 1 1538348 1539968 Pumo9g02514 9 59940995 59943041 PCT