Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02490 ATGGATAGCAGGTGGCCCACAAGGAGGCTAGAGTTTGCAGCTCAAGTGATTGTGGATGCACTGAAAGATAACAAGGTTGTGAAACCAGGCTCAAGTGGGATGGCAAGGCAAGATGTGAGAGATGCAGCTAGACTCCACATTGGTGACACAGGCTTACTTGATTATGTACTCAAATCACTCAACAATGTGATTGTTGGAAACTATGTTGTTCGTCGCATGGTGAATCCATCAACTAGAATCCTTGAGTACACTATTCATGATCTTGGAAAGAGGTTCAAAGACCCTGAAGTGGAGAATGAGGTGATGGCTTGTGTAGATCAACAATTAGTAGAATCATCTTGGATGCCTGGTAACGATGTGTACTGTGATGCATTGTTTTTGTACAAGAATGTGCTATTGGGTTACCCTGATTCAGAAGCAGTGGACATGGCAGTTCAGACAATTCTAGACAGCAGATACTTTGTGAAGGAGTGGCCAGTGAGGGATGAAATGGAGGAGCAGGTATTGACATTCATTTGCCGCTTGCAACCAAATTTTGTGGACAAAAATTATGAGCTGAAAGGTCTACCATGTGGTGAGGTTGTGGTGGTTCCACTGCATGCAACAGTTGGGGACTTGAAGAGAGCTGCTGAGGCTGCTCTGAGGGACACTTACTGCATTGCAGAAAGGCTTATAGTGACAGACATTAAAGAACTTATGGATGTGAGTGATGAGGAAGTGTTGTTTGGACTAATCCAGTCTGGTGTGGAACTTTGTGTGAGGGGAATTGCTATTGATTTGTTGACCCCTTTGAAGTATCAGGGTGGATCTGATGAGTCTGACAACTGGAAGGTGAGATGTGAGTGTGGAGCTCGAGATGATGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAGGTGTGGCAGCATACTCGCTGCTGTGGCATTGATGATTCTGAGACAGTGCCACCACTGTTTGTGTGCACTGGTTGCTGTGACTCACTAGTACCCTCCTCAAGGACTGAATCAGCCTTTGGTGTGGATTCTGCTGATTCTTTTCTCATTTCAGAAGACCATACCCTTTTGCTAGAATATGACTATGCATACTAA 1089 0.449 MDSRWPTRRLEFAAQVIVDALKDNKVVKPGSSGMARQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHDLGKRFKDPEVENEVMACVDQQLVESSWMPGNDVYCDALFLYKNVLLGYPDSEAVDMAVQTILDSRYFVKEWPVRDEMEEQVLTFICRLQPNFVDKNYELKGLPCGEVVVVPLHATVGDLKRAAEAALRDTYCIAERLIVTDIKELMDVSDEEVLFGLIQSGVELCVRGIAIDLLTPLKYQGGSDESDNWKVRCECGARDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSLVPSSRTESAFGVDSADSFLISEDHTLLLEYDYAY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02490 362 CDD PHD_MMD1_like 280 324 - -
Pumo9g02490 362 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 336 - -
Pumo9g02490 362 SMART PHD_3 279 325 IPR001965 -
Pumo9g02490 362 Pfam PHD-finger 279 325 IPR019787 -
Pumo9g02490 362 SUPERFAMILY FYVE/PHD zinc finger 269 331 IPR011011 -
Pumo9g02490 362 ProSitePatterns Zinc finger PHD-type signature. 280 324 IPR019786 -
Pumo9g02490 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 330 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02490 Pumo-Chr9 59552414 59553502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02490 2 332 PHD Transcription Factor Family AT5G22260 35.196 3.28e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo9g02490 PHD 5.4e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02490 K26271 - gmx:100797388 660.988