Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02487 ATGACGGGGAAGAAGAATGTGAAGGTGGCGACGACTGAGGAAGAGGGAGAGGAGGGGAAGCAAACGACGACGTCGTCTTCGAGATCTGTTTCTTCTTCTCCGTCGTCGTCGTCGTCTTCGGACCAGAGAGAGTACGAGGTGCAGGACCTGCGGGATCGGTTGAAATCGTCGAGAGGGAGCAGGTTCAATCTGATAGAGAACCAGTTGGGACTCAACTCGAGTTGGAGCAAGTTCAGTCGCCAAGCGCTTCTCCAAGGAATCCGAGGCTTCTCCAAGGACTTCTTCAAAGACTTCGTTATTCACCCTGATAACAGGTGGTATCGGGCATGGTCAAAATTCATATTGCTATGGGCAGTGTATTCATCCTTCTTCACCCCAATGGAGTTTGGATTTTTCCGTGGCCTGCCTGAGAATCTCTTTATACTGGACATTATTGGACAAATAGCTTTTCTGGTGGATATTGTCTTGCAATTCTTTGTTGCTTACAGAGACAGTCAGACCTATCGTATGGTCTACAAGCGAACCCCTATTGCTCTGCGGTATCTAAAATCTAACTTCATATTTGATCTTCTTGGATGTATGCCCTGGGACATCATCTACAAGGCTTGTGGACGAAAAGAGGAAGTGAGGTACCTTTTGTGGATCAGATTATATAGGGTGCGGAAAGTCACAGATTTTTTCCACAAGTTGGAGAAGGACATACGTGTCAATTACATTATTACCCGCATTGTGAAACTGATAGTAGTTGAACTCTATTGCACCCATACAGCAGCCTGCATTTTCTACTATTTGGCTACTACACTACCTGAGTCCCAAGAAGGGTACACATGGATAGGAAGTTTAAAACTGGGTGACTATAGTTATTCACATTTCAGAGAAATTGATATTTGGAAGCGCTACACAACATCTCTGTATTTCGCTATTGTTACAATGGCTACAGTTGGCTATGGAGATATACATGCAGTAAATATGAGGGAGATGGTATTCATAATGATATATGTTTCATTTGATATGATTCTTGGTGCCTATTTGATTGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAGACTGTAAAGTTTAGGGACAAGATGACAGACCTTATGAAATATATGAACAGAAATAGGCTTGGAAGGGATATCCGTGAACAAATTAAAGGCCATGTGCGCTTACAGTATGAGAGTAGCTACACTGAGGCTGCTGTCATTCAGGATATCCCTATTTCTATTCGAGCTAAGATATCCCAAACATTATATTTGCCATACATTGAAAAGGTTTCCCTTTTTAAAGGATGCTCTTCAGAATTCATCAATCAGATTGTTATTAAGCTCCATGAGGAGTTCTTCCTTCCAGGGGAAGTTATAATGGAACAAGGAAATGTTGTAGATCAACTTTATTTTGTCTGTCATGGAGTGCTGGAGGAAGTAGGCACAGCTGAAGACGGGTCTGAAGAAACTGTTTCACTTCTGCAGCCTAACAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTCCGAGTTTGTGAACTGAGTAGACTCCTGCGACTTGATAAACAGTCATTTACGAATATCCTAGACATATACTTTTATGATGGAAGGAAAGTATTAAACAACCTTCTAGAGGGAAAAGAGTCTTTTCGAGGTAAGCAGTTGGAGTCAGACATCACATTTCATATTGGAAAGCAAGAAGCTGAGCTTTCTTTGAAGGTCAATAGTGCAGCTTTTCATGGGGATCTGTATCAGCTAAAAGGTTTAATTCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGGTCACCTTTGCATCTTGCAGCATCTAGAGGACATGAAGATATCACTCTTTTCCTTATTCAAGAACGTGTAGATGTCAATATTAAAGATAACTTCGGGAACACACCCTTACTTGAAGCAGTTAAGAATGGACATGATCGGGTTGCTTCTTTACTTGTTCAAGAAGGGGCCTCTATGAAAATCGAAAATGCTGGTAGTTTTTTGTGTACAGCAGTTGCAAGGGGAGATTCAGATTATCTTAAAAGACTTTTATCCAATGGCATGGATCCTAACTTAAAAGATTATGATTACCGAAGTCCTCTTCACATTGCTGCAGCTGAAGGTTTATACTTCATGGCAAAGTTGCTATTAGAAGCTGGAGCTAGTGTTTTTACCAAAGACAGATGGGGAAATACACCTCTTGATGAAGCCCGGATGTGTGGAAATAAGAATCTGATCAAGCTACTGGAAGATGCAAAATCTGCTCAACTGTCAGAATTCCCATGTCGCTCCCAAGAATTTACAGATAAAATGCATCCAAAGAAGTGCACGGTGTTCCCTTTCCACCCGTGGGATCCGAAAGATAATAGAAGACATGGAATTGTATTATGGATACCACACTCCATCGAAGAGCTAATCAAATCAGCGGCAGAACAAATAGATATTTCTGGCGATTCTTGTATTTTATCTGAAGATGCTGGTAAAATTACTGATGTGGACATGATTAAGGATGGTCAGAAGCTGTATTTAGTCCATGAAACACATTAG 2562 0.4118 MTGKKNVKVATTEEEGEEGKQTTTSSSRSVSSSPSSSSSSDQREYEVQDLRDRLKSSRGSRFNLIENQLGLNSSWSKFSRQALLQGIRGFSKDFFKDFVIHPDNRWYRAWSKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVAYRDSQTYRMVYKRTPIALRYLKSNFIFDLLGCMPWDIIYKACGRKEEVRYLLWIRLYRVRKVTDFFHKLEKDIRVNYIITRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDYSYSHFREIDIWKRYTTSLYFAIVTMATVGYGDIHAVNMREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTVKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQYESSYTEAAVIQDIPISIRAKISQTLYLPYIEKVSLFKGCSSEFINQIVIKLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGTAEDGSEETVSLLQPNSSFGEISILCNIPQPYTVRVCELSRLLRLDKQSFTNILDIYFYDGRKVLNNLLEGKESFRGKQLESDITFHIGKQEAELSLKVNSAAFHGDLYQLKGLIRAGADPNKTDYDGRSPLHLAASRGHEDITLFLIQERVDVNIKDNFGNTPLLEAVKNGHDRVASLLVQEGASMKIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLHIAAAEGLYFMAKLLLEAGASVFTKDRWGNTPLDEARMCGNKNLIKLLEDAKSAQLSEFPCRSQEFTDKMHPKKCTVFPFHPWDPKDNRRHGIVLWIPHSIEELIKSAAEQIDISGDSCILSEDAGKITDVDMIKDGQKLYLVHETH 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02487 853 SMART cnmp_10 428 546 IPR000595 -
Pumo9g02487 853 FunFam Potassium channel KAT2 416 553 - -
Pumo9g02487 853 CDD CAP_ED 428 542 IPR000595 -
Pumo9g02487 853 Gene3D - 670 764 IPR036770 -
Pumo9g02487 853 Gene3D - 109 354 - -
Pumo9g02487 853 Gene3D Helix hairpin bin 355 411 - -
Pumo9g02487 853 FunFam Potassium channel SKOR 108 353 - -
Pumo9g02487 853 ProSiteProfiles Ankyrin repeat region circular profile. 701 733 - -
Pumo9g02487 853 Pfam KHA, dimerisation domain of potassium ion channel 779 848 IPR021789 -
Pumo9g02487 853 Pfam Ion transport protein 108 353 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo9g02487 853 Pfam Ankyrin repeats (3 copies) 674 755 IPR002110 GO:0005515
Pumo9g02487 853 Pfam Ankyrin repeats (3 copies) 579 667 IPR002110 GO:0005515
Pumo9g02487 853 Gene3D - 561 669 IPR036770 -
Pumo9g02487 853 ProSiteProfiles Ankyrin repeat region circular profile. 637 668 - -
Pumo9g02487 853 ProSiteProfiles Ankyrin repeat profile. 637 669 IPR002110 GO:0005515
Pumo9g02487 853 ProSiteProfiles cAMP/cGMP binding motif profile. 428 548 IPR000595 -
Pumo9g02487 853 SUPERFAMILY Voltage-gated potassium channels 101 353 - -
Pumo9g02487 853 PANTHER POTASSIUM CHANNEL AKT1 80 850 IPR045319 GO:0005249|GO:0006813
Pumo9g02487 853 PRINTS EAG/ELK/ERG potassium channel family signature 300 317 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo9g02487 853 PRINTS EAG/ELK/ERG potassium channel family signature 344 353 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo9g02487 853 PRINTS EAG/ELK/ERG potassium channel family signature 143 153 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo9g02487 853 PRINTS EAG/ELK/ERG potassium channel family signature 252 262 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo9g02487 853 ProSiteProfiles Ankyrin repeat profile. 701 733 IPR002110 GO:0005515
Pumo9g02487 853 FunFam Gated outwardly-rectifying K+ channel 643 769 - -
Pumo9g02487 853 ProSiteProfiles Ankyrin repeat profile. 668 700 IPR002110 GO:0005515
Pumo9g02487 853 Pfam Cyclic nucleotide-binding domain 448 532 IPR000595 -
Pumo9g02487 853 SMART ANK_2a 734 764 IPR002110 GO:0005515
Pumo9g02487 853 SMART ANK_2a 701 730 IPR002110 GO:0005515
Pumo9g02487 853 SMART ANK_2a 668 697 IPR002110 GO:0005515
Pumo9g02487 853 SMART ANK_2a 604 633 IPR002110 GO:0005515
Pumo9g02487 853 SMART ANK_2a 637 666 IPR002110 GO:0005515
Pumo9g02487 853 MobiDBLite consensus disorder prediction 22 43 - -
Pumo9g02487 853 PRINTS Ankyrin repeat signature 717 731 IPR002110 GO:0005515
Pumo9g02487 853 PRINTS Ankyrin repeat signature 605 620 IPR002110 GO:0005515
Pumo9g02487 853 SUPERFAMILY Ankyrin repeat 576 756 IPR036770 -
Pumo9g02487 853 Gene3D Jelly Rolls 412 549 IPR014710 -
Pumo9g02487 853 ProSiteProfiles Ankyrin repeat region circular profile. 604 636 - -
Pumo9g02487 853 MobiDBLite consensus disorder prediction 1 45 - -
Pumo9g02487 853 SUPERFAMILY cAMP-binding domain-like 356 545 IPR018490 -
Pumo9g02487 853 ProSiteProfiles KHA domain profile. 780 853 IPR021789 -
Pumo9g02487 853 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02487 Pumo-Chr9 59533995 59545234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02487 675 754 Ion Channels AT5G37500 35.294 9.97e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02487 K21867 - gmx:100814385 1590.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02487 9 59533995 59545234 Pumo9g02487 9 59533995 59545234 ECH