Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02473 ATGGGAAGGCAACCTTGTTGTGATAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAGCTCATCAGCTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGCTAGCAGGACTATTAAGGTGTGGGAAGAGTTGCAGGCTCAGGTGGACAAATTACCTGAGGCCAGACTTAAAGAGAGGCCTTCTATCAGAATACGAAGAAAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGATGGTCCAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATAAAAAACCATTGGAACACCCACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCTGTCACACACAAACCACTACCTAATGCAACTGAACAAACCCAAAATCAAACCAAACAAGAACAACAACAACAACTACACCACCAACCAGTAGAAGAACAGCAGAACCAACAACCTTTGCAAGTTGACCCTAACAAGGAGCCAGAGACTTCACTGGAGTCATCAACCATCACTGAAGAAGCCAAAGAGGAAGACCAAGTCATAACACCCCTATTTGACACTATGGAGCTAATGAATGGCTTCTGCACAGATGAAGTTCCAATAATTGAACCTGATGAGATTCTAATGCCTTGTGCTCCTTCCTCTTCATCCACCACCTCTACTTCTTCAAATTCAACCAATTTCCTTGAAGACTTGCAGCTACCAGATTTTGAATGGTCTTGTAATTACAATGATAATAGCACTATTACTAACAATAACATCAATGAAGACGACAACAACGACAACAACAATAGCAGCATGGCCTTGTGGGATGATGACATTATTGGCAAACTTAATTGGCTGATTAATGAAGATGATGATAGTGATGGAAACCAAGTGTTTGATTCTTCTCTCACTCAGTTTTCAAAAATGTTCATGGATTCAGAATCTTGGGCATATGGCTTGTTTTGA 978 0.4131 MGRQPCCDKVGLKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLPNATEQTQNQTKQEQQQQLHHQPVEEQQNQQPLQVDPNKEPETSLESSTITEEAKEEDQVITPLFDTMELMNGFCTDEVPIIEPDEILMPCAPSSSSTTSTSSNSTNFLEDLQLPDFEWSCNYNDNSTITNNNINEDDNNDNNNSSMALWDDDIIGKLNWLINEDDDSDGNQVFDSSLTQFSKMFMDSESWAYGLF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02473 325 MobiDBLite consensus disorder prediction 120 187 - -
Pumo9g02473 325 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Pumo9g02473 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo9g02473 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo9g02473 325 CDD SANT 16 61 IPR001005 -
Pumo9g02473 325 FunFam MYB transcription factor 11 67 - -
Pumo9g02473 325 MobiDBLite consensus disorder prediction 129 177 - -
Pumo9g02473 325 Gene3D - 71 162 - -
Pumo9g02473 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo9g02473 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo9g02473 325 FunFam MYB-related transcription factor 70 130 - -
Pumo9g02473 325 SMART sant 66 114 IPR001005 -
Pumo9g02473 325 SMART sant 13 63 IPR001005 -
Pumo9g02473 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo9g02473 325 CDD SANT 74 112 IPR001005 -
Pumo9g02473 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo9g02473 325 Gene3D - 11 67 - -
Pumo9g02473 325 PANTHER F14D16.11-RELATED 1 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02473 Pumo-Chr9 59239505 59242136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02473 1 297 MYB Transcription Factor Family AT1G66230 56.478 1.96e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo9g02473 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02473 K09422 - gmx:100800494 534.643