Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02448 ATGGCACTCTCTTTGACATCTAATGGGGTCAATGAGTACCAAAAATGTGTGGTTGAAGAGGAAGATGGCTCACAAAGTACTAATGGGCTCAGCAATGATTCAGCTTCAGCCATAACCCATTCTCCTCCTCTATGTGGCAATGGCAATGGCTATGTTCATAAGGGCACAAATCACCAACTTGAAGAAGCAGAATCTCTGATTAATTTCAAAGCCAATGATCAGTACAGCACCCTCATGCAAGGTAGTGAATCTTTTCTTAGCTTTCAGCAGAGTTGGCTGTTCTCCAAAGAGAGTGATTTGCATGAAGGTTATAACCAATGGAACCATGTTATTAGTCCTAAAAGCCACACAGATATGCGCCTAGTGCAAAATTTCAGTTGCTTTGAAACTGCCACTGGCTATAGCTCCATATTCAATGGTGCAAAAGAGAAGCATTGTGGTGAAAGTTCATCATCTGGGTGGCTATACTCTGAACCAAATGTCCCTAGTGATAGCCTGCATGAGTCACCAGCACAAGAATTGGTCTTGAGAAAGCGCTCTTCTATGGGAGAGAACATGCAAGCTGCCAATGCCAAGAAGCCATGCACAAGTGCAAGTAAAGCAGCAAAACCAAAGTCAAACCCATCCAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATACTACAAGAACTGGTCCCCAACGGCTCCAAGGTTGATTTGGTCACAATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCCCCTGACATTTCTCAAGTGAGACAAGCCATTGATGCCATTCTTTCATCTCATAGATGA 888 0.4336 MALSLTSNGVNEYQKCVVEEEDGSQSTNGLSNDSASAITHSPPLCGNGNGYVHKGTNHQLEEAESLINFKANDQYSTLMQGSESFLSFQQSWLFSKESDLHEGYNQWNHVISPKSHTDMRLVQNFSCFETATGYSSIFNGAKEKHCGESSSSGWLYSEPNVPSDSLHESPAQELVLRKRSSMGENMQAANAKKPCTSASKAAKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDAILSSHR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02448 295 Gene3D - 203 265 IPR036638 GO:0046983
Pumo9g02448 295 SMART finulus 214 263 IPR011598 GO:0046983
Pumo9g02448 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 267 IPR036638 GO:0046983
Pumo9g02448 295 FunFam Transcription factor bHLH83 206 265 - -
Pumo9g02448 295 MobiDBLite consensus disorder prediction 185 214 - -
Pumo9g02448 295 Pfam Helix-loop-helix DNA-binding domain 218 258 IPR011598 GO:0046983
Pumo9g02448 295 CDD bHLH_AtIND_like 209 271 - -
Pumo9g02448 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 257 IPR011598 GO:0046983
Pumo9g02448 295 MobiDBLite consensus disorder prediction 185 220 - -
Pumo9g02448 295 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 58 265 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02448 Pumo-Chr9 58787298 58788721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02448 47 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 46.899 8.45e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo9g02448 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02448 - - gmx:106795957 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02448 9 58787298 58788721 Pumo9g02448 9 58787298 58788721 ECH
Pumo1g00133 1 2297803 2301013 Pumo9g02448 9 58787298 58788721 PCT