Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02447 ATGGACGGTTCTCCACCACTGGAGGCGGAGGCGACGGCGGTGGCCGTACGGCGGGCCTTGGAGCTGCTGCAGCTGAACGACCCCGTTTTGAGAGTCCAAGCGGCGAGGGACATCCGCCGCCTCACCAAGACCTCCCAGCGGTGCCGCCGCCAGCTCCGCCAAGCCGTGGCGCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTTCCACGAACCCGCGCTTCTCGCTCTGCTCAACCTCGCCGTACAAGACGAAAAGAACAAAATTAGCATTGTGGAAGCTGGTGCATTAGAGCCAATCATTAGTTTCCTCTCGTCACAAAATCCAAATCTGCAGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGCCTCTCCAACCAACAAACCAATCATCAGTGCTTGTGGCACCATTCCTCTCCTTGTGAATATTCTCAGAGATGGAAGCCCCCAAGCTAAAGTTGATGCTGTGATGGCTCTGTCCAATTTATCAACACAACCTGAAAACCTCAGCATCATTCTCGAAACAAATGCAACCCCTTTCATAGTTGGCCTTCTCAAAACCTGTAGAAAATCCTCAAAAATAGCTGAAAAATGTTCTGCTCTGATAGAATCCTTGGTGGGTTATGAGGAGGGCAGAACTGCCTTAACATCTGAAGAAGGTGGGGTTCTTGCAGTTGTGGAAGTTCTTGAAAATGGAACCCCCCAAAGTAGGGAACATGCTGTTGGAGCACTGCTGACAATGTGCCAAAGTGATAGATGTAAATATAGGGAACCAATTCTTAGAGAAGGTGTTATTCCAGGACTTCTTGAGCTTACAGTCCAAGGAACCCCCAAGTCTCAGCCAAAAGCACGTACCCTTTTGCAGCTACTAAGAGAGTCTCCATATTCAAGACCTGAAGTTGAACCTGACACTCTTGAGAAATATAGTGTGTGA 939 0.4995 MDGSPPLEAEATAVAVRRALELLQLNDPVLRVQAARDIRRLTKTSQRCRRQLRQAVAPLVSMLRVDSPEFHEPALLALLNLAVQDEKNKISIVEAGALEPIISFLSSQNPNLQEYATASLLTLSASPTNKPIISACGTIPLLVNILRDGSPQAKVDAVMALSNLSTQPENLSIILETNATPFIVGLLKTCRKSSKIAEKCSALIESLVGYEEGRTALTSEEGGVLAVVEVLENGTPQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPEVEPDTLEKYSV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02447 312 FunFam U-box domain-containing protein 4 4 312 - -
Pumo9g02447 312 PANTHER U BOX DOMAIN-CONTAINING 16 293 - -
Pumo9g02447 312 SMART arm_5 85 125 IPR000225 GO:0005515
Pumo9g02447 312 SMART arm_5 45 83 IPR000225 GO:0005515
Pumo9g02447 312 SMART arm_5 167 209 IPR000225 GO:0005515
Pumo9g02447 312 SMART arm_5 126 166 IPR000225 GO:0005515
Pumo9g02447 312 SMART arm_5 210 251 IPR000225 GO:0005515
Pumo9g02447 312 SUPERFAMILY ARM repeat 15 292 IPR016024 -
Pumo9g02447 312 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 137 179 IPR000225 GO:0005515
Pumo9g02447 312 Gene3D - 6 303 IPR011989 -
Pumo9g02447 312 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 54 96 IPR000225 GO:0005515
Pumo9g02447 312 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 96 133 IPR000225 GO:0005515
Pumo9g02447 312 Pfam Armadillo-like 101 171 IPR006911 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02447 Pumo-Chr9 58763583 58767163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02447 16 293 U-box Gene Family AT2G23140 33.214 4.20e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02447 - - gmx:100793971 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02447 9 58763583 58767163 Pumo9g02447 9 58763583 58767163 ECH
Pumo1g00134 1 2340653 2344768 Pumo9g02447 9 58763583 58767163 PCT