Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02442 ATGAGAAAACCTTGTTGTGACAAGGAAAGCATCAATAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAGCTCATTGACTACATCCGAGTTCATGGTGAAGGCTGTTGGCGTTCCATTCCCAAAGCTGCTGGGCTGCATCGTTGTGGCAAAAGCTGTAGGCTGAGATGGTTAAACTACTTAAGACCAGACATCAAACGTGGAATCTTTGCTGAAGATGAGGAAGACCTCATCATCAAACTCCATGCCCTCCTTGGTAACAGGACAGACAATGAGGTGAAGAACTATTGGAATTCTCACATCCGCAGAAAACTAATAAAGATGGGAATTGATCCAAATAACCATAAGCCACACCAAAGATTTCCTCGTCCTCATCATGCTTCTGCTGAGGCTGCATCAACATCTGAGTCCATGTACAAAGTCCCTTTCTTCAAATCCAGTGGTGCAGCTGCCACGTCTGACCATAGGATTTCGTCCACAAAAGAAGAAACAGCAATTATTTCCTCACCCCCTTTGAATCTTGACCTAACAATTGCTTTACCTTCGCCTATGATTCGTGCTGTGGAACAAGACAAGCCTATACAAAATTCTGAGTCCACCAAGACACGGGACATGGATATAGATCTAGATCTCAACTGTTAG 639 0.4397 MRKPCCDKESINKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAEDEEDLIIKLHALLGNRTDNEVKNYWNSHIRRKLIKMGIDPNNHKPHQRFPRPHHASAEAASTSESMYKVPFFKSSGAAATSDHRISSTKEETAIISSPPLNLDLTIALPSPMIRAVEQDKPIQNSESTKTRDMDIDLDLNC 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02442 212 MobiDBLite consensus disorder prediction 195 212 - -
Pumo9g02442 212 Gene3D - 68 130 - -
Pumo9g02442 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Pumo9g02442 212 CDD SANT 15 60 IPR001005 -
Pumo9g02442 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 104 IPR017930 -
Pumo9g02442 212 FunFam MYB-related transcription factor 12 65 - -
Pumo9g02442 212 Gene3D - 13 65 - -
Pumo9g02442 212 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pumo9g02442 212 SUPERFAMILY Homeodomain-like 11 96 IPR009057 -
Pumo9g02442 212 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 155 - -
Pumo9g02442 212 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pumo9g02442 212 MobiDBLite consensus disorder prediction 191 212 - -
Pumo9g02442 212 SMART sant 65 102 IPR001005 -
Pumo9g02442 212 SMART sant 12 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02442 Pumo-Chr9 58727561 58730096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02442 2 185 MYB Transcription Factor Family AT4G38620 50.000 4.01e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo9g02442 Myb_DNA-binding 9.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02442 K09422 - gmx:100793444 342.043