Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02437 ATGGGGTGCTGCTTCAGTGCCAGGATCAAAGCTGAGAGCCCTCCACGCAATGGTTTGGGTTCAAAGGATGGTAACAAGGAAGAGGATGGCTTAAGCAGCAAGGTCTCCAATCCCTCCGTTCCTCCAACTCCACGGACGGAGGGTGAGATCTTGAAGTCCTCAAATATGAAGAGCTTCAACTTTAGTGAGCTAAAAACTGCTACAAGGAACTTTCGTCCGGATAGTGTGGTGGGTGAAGGTGGTTTTGGCTGTGTTTTTAAGGGGTGGATTGATGAACAGACACTTGCACCAGTTAGACCAGGGACTGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAGGTCTGCAGGGACACAGTGAATGGTTGACAGAAATCAATTACCTGGGGCAGCTGCATCATCCTAATCTTGTGAGACTGATTGGTTACTGCTTAGAGGATGACCAACGGCTTTTGGTGTATGAATTTTTGACCAAGGGGAGTTTGGATAATCATCTATTTAGGAGAGCTTCTTACTTTCAACCACTTTCTTGGAACATCCGTATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCATAGCGATGAAGCAAAAGTGATATATCGAGACTTCAAAGCTTCAAATATCTTACTTGATTCGAATTACAATGCAAAACTTTCTGATTTTGGCTTGGCAAAGGATGGACCAGCAGGTGATAAGAGCCATGTCTCTACAAGAGTAATGGGCACATATGGCTATGCTGCCCCCGAATATATGGCCACAGGTCACTTGACAAAGAAGAGTGATGTATACAGCTTTGGGGTTGTTCTGCTTGAAATTATGTCCGGCAAACGTGCACTTGACAGCAACAGGCCAAGTGGGGAGCACAATTTAATTGAATGGGCCAAACCTTACCTCAGCAGCAAGCGCAGGATCTTCCAAGTCATGGATGCTCGCATCGAAGGCCAATACACGTTGCGTGAAGCAATGAAAGTAGCCAACCTTGCCATTCAATGCCTGTCTGTGGAACCAAGATTTAGACCAAAGATGGATGAAGTGGTGAGAGCATTGGAGGAACTTCAGGATTCTGATGACAGAGCTGGAGGGGCGGGAAGCTCTCGCAATCAAACGGTAAGAAGGAGTGGCCATGGCTCAAGCAGCAGTGGCCCTAGACAACATAGAGGTAAACAACAAGGAAGTGAAAAGTGA 1197 0.4637 MGCCFSARIKAESPPRNGLGSKDGNKEEDGLSSKVSNPSVPPTPRTEGEILKSSNMKSFNFSELKTATRNFRPDSVVGEGGFGCVFKGWIDEQTLAPVRPGTGMVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVRLIGYCLEDDQRLLVYEFLTKGSLDNHLFRRASYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKASNILLDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDSNRPSGEHNLIEWAKPYLSSKRRIFQVMDARIEGQYTLREAMKVANLAIQCLSVEPRFRPKMDEVVRALEELQDSDDRAGGAGSSRNQTVRRSGHGSSSSGPRQHRGKQQGSEK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02437 398 PANTHER OS01G0588500 PROTEIN-RELATED 39 357 - -
Pumo9g02437 398 MobiDBLite consensus disorder prediction 364 390 - -
Pumo9g02437 398 ProSitePatterns Protein kinases ATP-binding region signature. 77 109 IPR017441 GO:0005524
Pumo9g02437 398 Gene3D Transferase(Phosphotransferase) domain 1 157 375 - -
Pumo9g02437 398 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g02437 398 MobiDBLite consensus disorder prediction 353 398 - -
Pumo9g02437 398 MobiDBLite consensus disorder prediction 1 49 - -
Pumo9g02437 398 CDD STKc_IRAK 77 356 - -
Pumo9g02437 398 FunFam Serine/threonine-protein kinase BIK1 38 156 - -
Pumo9g02437 398 Pfam Protein tyrosine and serine/threonine kinase 75 353 IPR001245 GO:0004672|GO:0006468
Pumo9g02437 398 SUPERFAMILY Protein kinase-like (PK-like) 48 354 IPR011009 -
Pumo9g02437 398 FunFam Probable serine/threonine-protein kinase PBL8 157 373 - -
Pumo9g02437 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Pumo9g02437 398 MobiDBLite consensus disorder prediction 31 49 - -
Pumo9g02437 398 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02437 Pumo-Chr9 58689336 58693615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02437 1 353 Glycoside Hydrolase AT3G07070 47.253 4.72e-110 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo9g02437 PK_Tyr_Ser-Thr 4.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02437 - - gmx:100775335 762.296