Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02436 ATGCTGGCGCTACTTCAGAACTGCTCCATGCCCCTCGCACGTGCGGTGCGCCCTCCACCTCGCACGCACGCGCGACCTTATTTCAGTGCCATGGCCTACGCATCCATTTCCCCACGTGCTAACTCTCACTCTCAGGTTCTCCTCGGCTTGTCCGACAAGGAGCTGCAACAACTTGCCCTTGACTTGGGTCAGGAATCCTATAGGGGCAAACAACTTCATCATTTTATATACCAGAGGAAGCTCAGAGAAATTCAGGATTTCACTCAGTTGCCTCAGGCATTTAGGAATACTCTTGAGGAAGCTGGATGGAAGGTGGGGCGGTCTCCTATTTTCGAAACTGTAACTGCAGCTGATGGAACTGTTAAGTTGTTGCTAAAGTTGGAGGACAATAGATTGATTGAAACTGTTGGCATTCCGGTTATGGTTGATAAGGGTTTGACTCGCCTCACAGCATGTGTCTCATCACAGGTTGGTTGCCCTTTACGCTGCTCTTTTTGTGCCACTGGAAAAGGGGGGTTTTCAAGGAATCTTCAGAGACATGAAATTGTTGAACAGGTCTTGGCCATTGAGGAGGTCTTCAAGAATAGGGTGACAAATGTAGTGTTTATGGGAATGGGTGAACCAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCGTTGCTTGAATAAGGATGTGCAAATTGGGCAAAGAATGATAACCATCTCCACCGTGGGAGTTCCAAATACAATAAAGAAACTTGCTTCTCACAAACTTCAATCTACTTTAGCTGTGAGCCTACATGCTCCGAACCAAAAACTTAGGGAGACAATTGTTCCAAGTGCAAAATCCTACCCACTGGATGCACTTATGAGTGACTGCAGAGAATACTTTCAGCAAACTAGTAGGCGGGTTTCCTTTGAATATGCACTTTTAGCTGGAGTCAATGACTCGGTAGACCATGCACTAGAACTTGCTGAATTACTCCATGGATCGGGCAGTGGATATCACGTCAACTTGATACCTTTCAATCCAATAGAAGGCTCTGAGTATCAGCGTCCTTCCAAGAGAGCAGTGCTAGCATTTGCTGGTGCTTTGGAGTCCTCCAAAATAACTGTTAGTGTACGTCAAACAAGAGGACTGGATGCAAATGCAGCTTGTGGGTTAGGGATGCGGCGGAACAGTCCAGCATACTACAGTCCTCCGCGGCGAGGATACGGTGGTGGCGGCGGCCGAGGAGGAGGGTCCGGCAGGAGGGGATTCGGTGGGGGCAGGCGCAGGGACAGCAACAATGGGAGCCTCTTGGTTCGTAACATTCCTCTCGATTGCAGATCCGAGGAGCTTCGCGTCCCGTTCGAGCGATTTGGACCTGTTCGTGATGTTTACATACCCAAGGATTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTATGATGCCTCAGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGAAGAGACAAGAAAAAGACCAGAGGAGATGCGCCACAGGACTAGAGGACCTGCGAGCCATGGAGGGCGAAGGTCTTCTCATTACGGGCGTTCTCGATCTCGCTCAATTACCAGATCACGCTCACCACCTTATCACTCTGGTTCTAGAAATCGATATCGCTCAAGGTCCTATTCTCCTGCTCCAAGACGGCAAAATGATTACTCTGTTTCCCCTAGGAGGCAAGCTGAGCACCCCAGATCACCAAGAGGTCCTCCCAGGGAGCGAGATGGTGATCAAAAGCGTAGGTCTTATTCTCCTGCTTATGGCAATGGTATTGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGAGGCTGATCGTGGCCAGTGGAAGTCATCGAGATCACCCCCTGGATCTAGATCAAGATCTGCTGAATTGTCACCAAGGCGTGGAAGATGA 1956 0.4862 MLALLQNCSMPLARAVRPPPRTHARPYFSAMAYASISPRANSHSQVLLGLSDKELQQLALDLGQESYRGKQLHHFIYQRKLREIQDFTQLPQAFRNTLEEAGWKVGRSPIFETVTAADGTVKLLLKLEDNRLIETVGIPVMVDKGLTRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQVLAIEEVFKNRVTNVVFMGMGEPMLNLKAVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDALMSDCREYFQQTSRRVSFEYALLAGVNDSVDHALELAELLHGSGSGYHVNLIPFNPIEGSEYQRPSKRAVLAFAGALESSKITVSVRQTRGLDANAACGLGMRRNSPAYYSPPRRGYGGGGGRGGGSGRRGFGGGRRRDSNNGSLLVRNIPLDCRSEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTRGPASHGGRRSSHYGRSRSRSITRSRSPPYHSGSRNRYRSRSYSPAPRRQNDYSVSPRRQAEHPRSPRGPPRERDGDQKRRSYSPAYGNGIEQNQSNGYAEKSMYKSEADRGQWKSSRSPPGSRSRSAELSPRRGR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02436 651 MobiDBLite consensus disorder prediction 391 422 - -
Pumo9g02436 651 MobiDBLite consensus disorder prediction 602 617 - -
Pumo9g02436 651 SUPERFAMILY Radical SAM enzymes 122 346 - -
Pumo9g02436 651 Gene3D - 45 101 - -
Pumo9g02436 651 SFLD adenosine C2 methyltransferase (RlmN-like) 42 381 IPR004383 GO:0006364|GO:0008173
Pumo9g02436 651 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 44 388 IPR027492 GO:0030488|GO:0070475
Pumo9g02436 651 CDD Radical_SAM 158 351 - -
Pumo9g02436 651 MobiDBLite consensus disorder prediction 570 596 - -
Pumo9g02436 651 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 418 557 - -
Pumo9g02436 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 425 503 IPR000504 GO:0003723
Pumo9g02436 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 427 496 IPR000504 GO:0003723
Pumo9g02436 651 Gene3D - 417 539 IPR012677 -
Pumo9g02436 651 NCBIfam 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 43 381 IPR027492 GO:0030488|GO:0070475
Pumo9g02436 651 MobiDBLite consensus disorder prediction 503 517 - -
Pumo9g02436 651 PANTHER 23S RRNA METHYLTRANSFERASE 32 381 IPR040072 -
Pumo9g02436 651 SFLD Radical SAM 42 381 IPR007197 GO:0003824|GO:0051536
Pumo9g02436 651 SUPERFAMILY RNA-binding domain, RBD 421 532 IPR035979 GO:0003676
Pumo9g02436 651 Pfam Radical SAM superfamily 154 315 IPR007197 GO:0003824|GO:0051536
Pumo9g02436 651 ProSiteProfiles Radical SAM core domain profile. 145 375 IPR007197 GO:0003824|GO:0051536
Pumo9g02436 651 Gene3D Aldolase class I 108 388 IPR013785 -
Pumo9g02436 651 FunFam Putative dual-specificity RNA methyltransferase RlmN 29 101 - -
Pumo9g02436 651 MobiDBLite consensus disorder prediction 536 569 - -
Pumo9g02436 651 MobiDBLite consensus disorder prediction 503 651 - -
Pumo9g02436 651 MobiDBLite consensus disorder prediction 518 535 - -
Pumo9g02436 651 FunFam Probable dual-specificity RNA methyltransferase RlmN 108 390 - -
Pumo9g02436 651 SMART rrm1_1 426 499 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02436 Pumo-Chr9 58676517 58686921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02436 407 487 Eukaryotic Initiation Factors Gene Family AT3G11400 37.037 1.00e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02436 K06941 - gmx:100801657 721.465