Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02425 ATGGCGACCGAGTCACACTGCGCGGTTTGCAAGGAACCCTTCGAACTTTCCACCATGGCGAAAGAAATGCCATGCAAACACATATACCACGCGGAATGCATCTTGCCGTGGCTCGCGATTCGGAACTCGTGCCCCGTGTGCCGGCACGAGTTGCCGTGCGAGAACGCACGTGCGAGACTGGAGCGCGTGGAGGAGGAGGAGGAGGAGGAAGAGAACAGCAACGTGGGGTTGACGATTTGGCGGTTACCGGGTGGTGGTTTTGCGGTGGGGAGGTTCGGGAGAAGAGAGGGTGAGAGAGAGGTTAACGTGCCTCTTGTGTACACGGAAGTGGATGGTGGGTTTAACTTCAACAACGTTGTTGTGGGGGAACCGAGGAGGGTTTCGTGGTCGGTGTCGGAGTCTAGAGGGAGGGGAAGGGGTGGCGCGTTTAGGAGAATGTTTAACGGTTTGTTTAGTTGCCTGAGAGGTGGTGGGGTTGGGCCACAGCGTTCTTCTTCGGCTTCTAGCTCTGCTTCCAGAACCGTGAGGAGTAATAGTCTTAGGGGTTCTCGTCCTAATAACGTGGGTCCCTCTCCACCTATTTCGCGTAGGACTTGGTCTATGGAAGTCAACGGTGGAACCAGACCATGGTAA 633 0.5577 MATESHCAVCKEPFELSTMAKEMPCKHIYHAECILPWLAIRNSCPVCRHELPCENARARLERVEEEEEEEENSNVGLTIWRLPGGGFAVGRFGRREGEREVNVPLVYTEVDGGFNFNNVVVGEPRRVSWSVSESRGRGRGGAFRRMFNGLFSCLRGGGVGPQRSSSASSSASRTVRSNSLRGSRPNNVGPSPPISRRTWSMEVNGGTRPW 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02425 210 ProSiteProfiles Zinc finger RING-type profile. 7 48 IPR001841 -
Pumo9g02425 210 MobiDBLite consensus disorder prediction 158 210 - -
Pumo9g02425 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 67 IPR013083 -
Pumo9g02425 210 MobiDBLite consensus disorder prediction 159 202 - -
Pumo9g02425 210 CDD RING-H2_RNF181 7 51 - -
Pumo9g02425 210 SUPERFAMILY RING/U-box 4 52 - -
Pumo9g02425 210 SMART ring_2 7 47 IPR001841 -
Pumo9g02425 210 Coils Coil 53 73 - -
Pumo9g02425 210 Pfam Protein of unknown function (DUF1117) 75 178 IPR010543 -
Pumo9g02425 210 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 5 52 - -
Pumo9g02425 210 Pfam Ring finger domain 6 48 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02425 Pumo-Chr9 58421756 58422388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02425 7 62 C3H Transcription Factor Family AT5G15820 53.571 1.87e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02425 K11982 - gmx:106796723 295.434