Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo9g02425 | ATGGCGACCGAGTCACACTGCGCGGTTTGCAAGGAACCCTTCGAACTTTCCACCATGGCGAAAGAAATGCCATGCAAACACATATACCACGCGGAATGCATCTTGCCGTGGCTCGCGATTCGGAACTCGTGCCCCGTGTGCCGGCACGAGTTGCCGTGCGAGAACGCACGTGCGAGACTGGAGCGCGTGGAGGAGGAGGAGGAGGAGGAAGAGAACAGCAACGTGGGGTTGACGATTTGGCGGTTACCGGGTGGTGGTTTTGCGGTGGGGAGGTTCGGGAGAAGAGAGGGTGAGAGAGAGGTTAACGTGCCTCTTGTGTACACGGAAGTGGATGGTGGGTTTAACTTCAACAACGTTGTTGTGGGGGAACCGAGGAGGGTTTCGTGGTCGGTGTCGGAGTCTAGAGGGAGGGGAAGGGGTGGCGCGTTTAGGAGAATGTTTAACGGTTTGTTTAGTTGCCTGAGAGGTGGTGGGGTTGGGCCACAGCGTTCTTCTTCGGCTTCTAGCTCTGCTTCCAGAACCGTGAGGAGTAATAGTCTTAGGGGTTCTCGTCCTAATAACGTGGGTCCCTCTCCACCTATTTCGCGTAGGACTTGGTCTATGGAAGTCAACGGTGGAACCAGACCATGGTAA | 633 | 0.5577 | MATESHCAVCKEPFELSTMAKEMPCKHIYHAECILPWLAIRNSCPVCRHELPCENARARLERVEEEEEEEENSNVGLTIWRLPGGGFAVGRFGRREGEREVNVPLVYTEVDGGFNFNNVVVGEPRRVSWSVSESRGRGRGGAFRRMFNGLFSCLRGGGVGPQRSSSASSSASRTVRSNSLRGSRPNNVGPSPPISRRTWSMEVNGGTRPW | 210 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo9g02425 | 210 | ProSiteProfiles | Zinc finger RING-type profile. | 7 | 48 | IPR001841 | - | |
Pumo9g02425 | 210 | MobiDBLite | consensus disorder prediction | 158 | 210 | - | - | |
Pumo9g02425 | 210 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 67 | IPR013083 | - | |
Pumo9g02425 | 210 | MobiDBLite | consensus disorder prediction | 159 | 202 | - | - | |
Pumo9g02425 | 210 | CDD | RING-H2_RNF181 | 7 | 51 | - | - | |
Pumo9g02425 | 210 | SUPERFAMILY | RING/U-box | 4 | 52 | - | - | |
Pumo9g02425 | 210 | SMART | ring_2 | 7 | 47 | IPR001841 | - | |
Pumo9g02425 | 210 | Coils | Coil | 53 | 73 | - | - | |
Pumo9g02425 | 210 | Pfam | Protein of unknown function (DUF1117) | 75 | 178 | IPR010543 | - | |
Pumo9g02425 | 210 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 5 | 52 | - | - | |
Pumo9g02425 | 210 | Pfam | Ring finger domain | 6 | 48 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo9g02425 | Pumo-Chr9 | 58421756 | 58422388 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo9g02425 | 7 | 62 | C3H Transcription Factor Family | AT5G15820 | 53.571 | 1.87e-18 | 80.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo9g02425 | K11982 | - | gmx:106796723 | 295.434 |